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ORF29A

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

ORF29A__YP_010084577__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:
YP_010084577 ↗
Protein ID:
ORF29A
Kingdom:
euk

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-83_114-155
PDB
Domain cluster: representative
D2 medium residues 156-232
PDB
Domain cluster: rep: cleavage_packaging_protein__YP_004207870__Cricetid_gammaherpesvirus_2__1605972__D137-212
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02500.23 best DNA_pack_N 124.6 8.60e-36 100.0% 27.3%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cwrB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 50.0 3.76e-01 77.9% 34.7%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 48.0 3.64e-01 74.0% 34.1%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 43.0 4.58e-01 98.7% 80.9%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.63 41.0 4.49e-01 80.5% 80.0%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.15e-01 71.4% 92.2%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 47.0 3.88e-01 83.1% 89.1%
1nmrA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.62 36.0 3.68e-01 93.5% 59.2%
4d3pA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 42.0 3.47e-01 74.0% 95.2%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.59 44.0 4.72e-01 93.5% 89.7%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 49.0 4.16e-01 96.1% 80.9%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.59 36.0 3.75e-01 96.1% 64.9%
1fkmA02 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 39.0 3.38e-01 72.7% 89.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 37.0 3.45e-01 70.1% 89.0%
1x4pA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.54 39.0 4.15e-01 76.6% 92.4%
1wwmA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.54 48.0 3.65e-01 100.0% 45.0%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 46.0 3.77e-01 97.4% 84.8%
1nzeA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.53 38.0 3.43e-01 76.6% 97.3%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.53 37.0 3.37e-01 96.1% 52.8%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 38.0 3.87e-01 96.1% 77.0%
1f8iA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.53 44.0 2.83e-01 97.4% 65.1%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.52 36.0 3.77e-01 71.4% 79.7%
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.34e-01 97.4% 77.7%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 35.0 3.49e-01 79.2% 67.1%
4ztkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 43.0 3.08e-01 97.4% 82.8%
1r4vA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.52 43.0 3.55e-01 96.1% 82.8%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.50e-01 98.7% 79.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470112 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.68 51.0 4.60e-01 81.8% 96.4%
4965039 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.64 47.0 3.27e-01 100.0% 24.5%
3780254 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 3.12e-01 74.0% 54.2%
1953103 602.2.1.1 ↗ alpha arrays › L-aspartase middle domain-like › RNA-binding protein She2p › RNA-binding protein She2p › She2p 0.58 40.0 2.87e-01 72.7% 67.1%
3625716 109.4.1.266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG 0.57 40.0 2.28e-01 75.3% 11.3%
3660212 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 4.26e-01 90.9% 82.4%
4490021 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.55 39.0 3.77e-01 75.3% 95.6%
3267527 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.53 36.0 3.73e-01 88.3% 73.3%
4954895 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 38.0 3.60e-01 93.5% 64.4%
3599717 3193.1.1.0 ↗ alpha arrays › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related › HopAB effectors Pto-binding domain-related 0.52 43.0 3.72e-01 94.8% 94.4%
3960463 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.52 35.0 3.90e-01 94.8% 90.0%
4530495 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.51 35.0 3.46e-01 72.7% 94.1%
3593361 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 38.0 3.92e-01 87.0% 82.7%
1736237 171.1.1.4 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.50 44.0 3.66e-01 96.1% 73.1%
1282240 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.50 34.0 3.72e-01 93.5% 88.5%
3582148 3621.1.1.1 ↗ alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Peptidase_S28 0.50 36.0 3.42e-01 79.2% 74.7%
5033360 101.1.1.131 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Arch_fla_DE 0.50 41.0 4.05e-01 92.2% 97.6%
D3 medium residues 233-302
PDB
Domain cluster: rep: ORF24__NP_733877__Callitrichine_gammaherpesvirus_3__106331__D132-231
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02500.23 best DNA_pack_N 104.2 1.50e-29 100.0% 25.8%