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ORF29

Euk-Vir

Retroperitoneal_fibromatosis-associated_herpesvirus

ORF29__YP_010084393__Retroperitoneal_fibromatosis-associated_herpesvirus__111469

Identity

Accession:: YP_010084393 ↗
Protein ID:: ORF29
Kingdom:: euk

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Retroperitoneal_fibromatosis-associated_herpesvirus

TaxID: 111469

Cluster

View cluster (63 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-426

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22	Terminase_6N	33.1	6.60e-08	59.7%	52.1%
PF02500.23 best	DNA_pack_N	274.9	1.30e-81	59.7%	64.9%
PF02499.23	DNA_pack_C	146.5	1.60e-42	31.7%	26.2%

D2 medium residues 30-67_117-136

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2eucA00	1.10.8.570	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB	0.57	39.0	3.25e-01	72.4%	80.4%
3idwA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.52	40.0	3.83e-01	82.8%	78.8%

D3 medium residues 439-455_622-678

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__YP_004940252__Saimiriine_betaherpesvirus_4__1535247__D425-441_605-646

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	68.1	1.10e-18	79.7%	15.1%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ifeA02	3.30.420.240	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.74	62.0	4.33e-01	90.5%	98.7%
8dkrB01	3.30.420.240	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.72	57.0	3.98e-01	85.1%	100.0%
1p65A00	6.10.140.90	Special › Helix non-globular › Helix Hairpins ›	0.67	25.0	2.90e-01	94.6%	45.6%
7npaA02	3.30.70.3340	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.63	35.0	3.40e-01	93.2%	47.1%
5m1pB00	3.30.420.240	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.62	52.0	3.89e-01	93.2%	98.9%
3foeA02	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.58	34.0	3.55e-01	79.7%	60.9%
2pw4A00	1.10.3300.10	Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain	0.57	39.0	2.97e-01	71.6%	37.7%
4krdB00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.56	45.0	3.47e-01	94.6%	78.4%
6ks6Z01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.55	41.0	2.86e-01	82.4%	67.7%
1mbyA00	2.40.50.930	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	30.0	3.00e-01	95.9%	49.3%
4e1oA03	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.53	37.0	3.42e-01	95.9%	55.1%
2anrA02	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.53	38.0	3.82e-01	95.9%	74.7%
6lw5A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	44.0	2.99e-01	94.6%	64.6%
4lvnP00	3.30.70.2380	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	31.0	3.11e-01	93.2%	53.1%
2e7zA01	2.20.25.90	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains	0.51	32.0	3.61e-01	89.2%	82.5%
2ctfA00	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.50	41.0	3.76e-01	98.6%	66.7%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4031863	2484.1.1.86 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease	0.74	63.0	4.48e-01	95.9%	94.3%
5083931	2484.1.1.77 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C	0.73	63.0	4.72e-01	93.2%	100.0%
4988089	2484.1.1.77 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C	0.67	55.0	4.11e-01	90.5%	100.0%
4028109	3525.1.1.0 ↗	alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain	0.65	36.0	3.80e-01	94.6%	58.5%
3940660	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.60	40.0	2.42e-01	70.3%	21.7%
None	—		0.58	42.0	3.55e-01	77.0%	99.2%
5033602	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.57	39.0	3.51e-01	94.6%	50.5%
3541	4107.1.1.1 ↗	alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR	0.57	39.0	2.97e-01	71.6%	37.5%
3417192	327.11.2.27 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin	0.56	34.0	3.96e-01	93.2%	90.0%
4026067	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.55	38.0	2.38e-01	73.0%	87.7%
3167635	101.1.2.267 ↗	alpha arrays › HTH › HTH › winged helix domain › Nse4_C	0.54	37.0	3.28e-01	74.3%	79.2%
3305572	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.54	43.0	2.84e-01	89.2%	34.3%
1879219	3016.1.1.19 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C	0.53	33.0	3.11e-01	89.2%	48.0%
3325330	3346.1.1.5 ↗	a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like	0.53	38.0	2.87e-01	75.7%	86.7%
3994831	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.53	43.0	2.99e-01	93.2%	90.2%
3411631	304.5.1.0 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like	0.53	35.0	3.37e-01	97.3%	56.7%
3397248	304.8.1.49 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1	0.52	34.0	3.21e-01	95.9%	51.6%
3403813	603.2.1.12 ↗	alpha bundles › STAT-like › STAT › STAT › 7tm_7	0.52	43.0	2.88e-01	100.0%	95.7%
3743565	109.4.1.313 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N	0.51	43.0	2.92e-01	98.6%	54.7%
3272887	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	42.0	3.59e-01	95.9%	80.7%
3466586	3346.1.1.5 ↗	a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like	0.51	34.0	2.81e-01	71.6%	67.9%
3303184	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.51	38.0	2.42e-01	81.1%	52.9%
3743674	4143.1.1.0 ↗	a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like	0.50	34.0	3.43e-01	94.6%	67.5%

D4 medium residues 456-621

PDB

Domain cluster: rep: tegument_protein_UL16__YP_010087586__Cervid_alphaherpesvirus_3__2115790__D494-638_653-663

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	220.1	6.60e-65	100.0%	46.4%