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ORF2

Euk-Vir

Porcine_astrovirus_2

ORF2__YP_009010980__Porcine_astrovirus_2__1105378

Identity

Accession:
YP_009010980 ↗
Protein ID:
ORF2
Kingdom:
euk

Quality

73.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Mamastrovirus› Porcine_astrovirus_2

TaxID: 1105378

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-259
PDB
Domain cluster: rep: coat_protein__YP_009237527__Lake_Sarah-associated_circular_virus-14_Viruses.__X__D77-111_199-281_337-370
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03115.21 best Astro_capsid_N 176.8 7.40e-52 96.2% 72.3%
PF03014.21 SP2 31.4 2.10e-07 83.3% 74.2%
D2 high residues 263-380
PDB
Domain cluster: rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ztnA02 2.40.30.190 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.80 75.0 7.03e-01 100.0% 87.2%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 49.0 5.70e-01 98.3% 100.0%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 48.0 5.32e-01 100.0% 96.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 44.0 4.55e-01 90.7% 80.7%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.57 38.0 4.07e-01 95.8% 79.8%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 4.61e-01 100.0% 99.0%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.55 39.0 3.34e-01 75.4% 86.6%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 37.0 3.47e-01 72.9% 90.6%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 37.0 3.11e-01 72.9% 77.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1877513 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 72.0 7.11e-01 89.0% 93.6%
397625 1.1.13.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › SP2_M 0.80 75.0 7.01e-01 100.0% 88.6%
3501754 1.1.13.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.63 37.0 3.95e-01 77.1% 64.8%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 5.12e-01 100.0% 97.0%
5024800 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 55.0 5.54e-01 98.3% 100.0%
4039213 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.57 36.0 4.21e-01 72.9% 92.5%
3891158 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.57 46.0 4.70e-01 100.0% 90.4%
3478986 60.1.2.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain 0.56 40.0 2.92e-01 75.4% 53.7%
4991187 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 42.0 4.62e-01 95.8% 100.0%
3788348 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.56 50.0 5.07e-01 100.0% 99.1%
3807393 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.56 42.0 4.39e-01 98.3% 87.3%
4014463 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 49.0 4.56e-01 98.3% 94.7%
3613252 1.1.7.99 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1, FAD_binding_6 0.52 44.0 4.26e-01 100.0% 80.7%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.52 46.0 4.72e-01 98.3% 98.3%
1806542 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.52 44.0 4.01e-01 100.0% 68.8%
3535347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 46.0 4.68e-01 97.5% 100.0%
3876448 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 3.73e-01 98.3% 67.9%
4350188 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.50 38.0 3.50e-01 81.4% 71.2%
D3 high residues 407-632
PDB
Domain cluster: rep: capsid_protein_precursor__YP_009041464__Bovine_astrovirus__1435485__D425-658
D4 high residues 678-747
PDB
Domain cluster: rep: capsid_protein_precursor__YP_009010945__Bovine_astrovirus_B76_HK__1027248__D694-757