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ORF2

Euk-Vir

Tobacco_virus_2

ORF2__YP_009352889__Tobacco_virus_2__1972995

Identity

Accession:: YP_009352889 ↗
Protein ID:: ORF2
Kingdom:: euk

Quality

91.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Tobacco_virus_2

TaxID: 1972995

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 257-307

PDB

Domain cluster: rep: putative_protein_P2__YP_001931931__Tobacco_vein_distorting_virus__192203__D1031-1055_1057-1076_1079-1084

D2 medium residues 1-74_126-182

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	74.8	9.50e-21	59.5%	17.2%
PF02123.22	RdRP_4	33.2	4.10e-08	44.3%	14.0%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rlfF03	2.40.430.10	Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP	0.57	25.0	2.96e-01	85.5%	58.0%
2w00A02	3.90.640.50	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.55	24.0	3.10e-01	80.9%	69.9%
1p6rA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	27.0	3.22e-01	83.2%	70.7%
2vvwA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.51	39.0	3.80e-01	96.9%	72.0%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	27.0	3.45e-01	99.2%	91.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.80	71.0	4.91e-01	91.6%	74.8%
None	—		0.76	68.0	4.76e-01	93.1%	77.0%
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.72	67.0	4.78e-01	100.0%	42.6%
5366	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.70	65.0	4.53e-01	100.0%	39.7%
3473558	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.62	52.0	4.33e-01	90.1%	62.6%
3960648	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.62	56.0	4.28e-01	100.0%	51.8%
2772442	159.1.2.3 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dATP-dGTP_PPHyd	0.58	31.0	3.46e-01	95.4%	65.7%
3578163	3198.1.1.1 ↗	alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA	0.53	36.0	3.66e-01	99.2%	71.2%
3621977	3198.1.1.1 ↗	alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA	0.53	39.0	4.11e-01	99.2%	87.0%
4927744	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.51	39.0	2.79e-01	81.7%	80.2%

D3 medium residues 75-125_183-256

PDB

Domain cluster: rep: polyprotein_P2a-P2b__YP_009140472__Cymbidium_chlorotic_mosaic_virus__1602124__D662-698_766-823

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	63.7	2.30e-17	59.2%	18.7%
PF02123.22	RdRP_4	25.0	1.30e-05	42.4%	12.5%