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ORF2

Euk-Vir

Small_anellovirus_1

ORF2__YP_238295__Small_anellovirus_1__289366

Identity

Accession:
YP_238295 ↗
Protein ID:
ORF2
Kingdom:
euk

Quality

81.0 mean pLDDT

Taxonomy

Shotokuvirae› Commensaviricota› Cardeaviricetes› Sanitavirales› Anelloviridae› Small_anellovirus_1

TaxID: 289366

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-246_490-513
PDB
Domain cluster: rep: capsid__YP_009551495__Molossus_molossus_circovirus_3__1959844__D38-102_119-228
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 262.0 1.60e-77 91.6% 34.7%
D2 high residues 254-260_351-484
PDB
Domain cluster: rep: ORF1__YP_009505738__Torque_teno_mini_virus_11__2065037__D379-509
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 125.7 3.20e-36 98.6% 26.1%
D3 high residues 289-347
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.64 34.0 4.05e-01 83.1% 80.6%
4i62A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 44.0 3.43e-01 84.7% 89.6%
2cunA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.59 45.0 3.20e-01 86.4% 98.5%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.57 48.0 3.91e-01 100.0% 78.0%
4w1vA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.31e-01 88.1% 43.7%
4crhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.55 37.0 3.21e-01 91.5% 43.6%
5bxhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 37.0 3.16e-01 89.8% 42.6%
5a15A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 36.0 3.16e-01 91.5% 44.2%
1a68A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 36.0 3.30e-01 91.5% 49.4%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.95e-01 86.4% 57.1%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 41.0 2.87e-01 93.2% 74.2%
4umwA02 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.53 32.0 2.85e-01 94.9% 36.0%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.53 41.0 2.71e-01 94.9% 57.5%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 36.0 3.03e-01 89.8% 41.3%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.54e-01 100.0% 62.2%
4yy8B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 36.0 3.31e-01 89.8% 56.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.11e-01 89.8% 57.7%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 26.0 2.72e-01 79.7% 42.9%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.51 36.0 2.77e-01 83.1% 28.5%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 38.0 2.80e-01 84.7% 65.2%
5irmC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 2.76e-01 91.5% 83.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3378291 109.4.1.2216 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif 0.62 42.0 2.45e-01 72.9% 7.7%
3624854 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.61 42.0 3.68e-01 100.0% 45.3%
3942871 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.59 48.0 3.67e-01 94.9% 85.8%
3964444 601.1.2.89 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PqiA 0.59 48.0 3.61e-01 94.9% 82.5%
3589150 2498.1.1.7 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N 0.58 47.0 2.69e-01 91.5% 26.4%
4933142 842.1.1.1 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.57 38.0 2.61e-01 72.9% 17.8%
5062758 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.37e-01 94.9% 78.3%
3164792 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.56 44.0 3.40e-01 94.9% 83.1%
4029990 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.53e-01 91.5% 15.6%
3318538 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.55 37.0 3.11e-01 89.8% 39.0%
3330557 7579.1.1.99 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4, Abhydrolase_6 0.55 41.0 2.78e-01 84.7% 90.7%
3325717 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.55 37.0 3.08e-01 88.1% 39.0%
3692778 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.54 39.0 3.14e-01 76.3% 52.2%
4114744 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.53 41.0 2.31e-01 84.7% 17.4%
4024671 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.53 39.0 2.86e-01 81.4% 28.3%
3942873 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.53 43.0 3.27e-01 94.9% 88.4%
3847390 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.52 36.0 3.02e-01 96.6% 39.1%
4026935 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.52 39.0 2.92e-01 83.1% 47.7%
3740414 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.52 37.0 3.13e-01 93.2% 45.0%
3912026 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.51 36.0 2.97e-01 89.8% 39.5%
3833836 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.51 40.0 3.09e-01 88.1% 77.7%
3614662 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.51 35.0 2.79e-01 89.8% 32.6%
3946883 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.51 39.0 2.96e-01 88.1% 77.4%
5049178 6155.1.1.24 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2085 0.50 39.0 3.18e-01 91.5% 50.0%
3424994 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.50 41.0 2.36e-01 96.6% 17.1%
4020201 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.50 35.0 2.55e-01 74.6% 34.4%
3787176 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.50 37.0 2.99e-01 88.1% 37.7%
3671718 109.4.1.2659 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.50 41.0 2.35e-01 96.6% 17.3%
3227145 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.50 39.0 3.17e-01 89.8% 43.3%
3999878 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.50 37.0 3.30e-01 89.8% 55.3%