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ORF2_protein

Euk-Vir

Cacao_swollen_shoot_Ghana_Q_virus

ORF2_protein__YP_009666829__Cacao_swollen_shoot_Ghana_Q_virus__2056885

Identity

Accession:
YP_009666829 ↗
Protein ID:
ORF2_protein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Cacao_swollen_shoot_Ghana_Q_virus

TaxID: 2056885

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-94
PDB
Domain cluster: rep: hypothetical_protein__YP_009506250__Cacao_swollen_shoot_CD_virus__1960255__D5-75
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.73 58.0 5.43e-01 87.2% 70.6%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 52.0 5.39e-01 76.7% 81.7%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 59.0 4.30e-01 93.0% 46.7%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.68 43.0 3.82e-01 75.6% 45.5%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 46.0 3.21e-01 72.1% 63.1%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.66 50.0 3.82e-01 80.2% 91.9%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.65 55.0 4.87e-01 93.0% 97.6%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 4.35e-01 81.4% 57.7%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.63 56.0 4.56e-01 97.7% 64.0%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.63 49.0 3.08e-01 83.7% 93.4%
1v9dB00 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.62 52.0 3.61e-01 96.5% 31.2%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.60 41.0 3.27e-01 73.3% 35.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054860 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.82 63.0 4.81e-01 80.2% 44.3%
3715946 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 49.0 4.22e-01 91.9% 41.6%
3719896 3755.2.1.0 ↗ alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein 0.77 48.0 4.64e-01 100.0% 56.8%
3529043 3922.1.1.179 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › bMERB_dom 0.71 61.0 4.76e-01 93.0% 47.2%
3199801 5001.1.1.144 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo 0.70 55.0 3.46e-01 82.6% 17.3%
5072326 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.70 61.0 5.41e-01 96.5% 66.4%
3691737 5076.2.1.9 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.70 55.0 3.46e-01 82.6% 18.0%
5041183 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.68 52.0 3.99e-01 86.0% 37.8%
3207024 4177.1.1.9 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.68 52.0 3.70e-01 81.4% 29.4%
4086322 5086.1.1.205 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30209 0.67 59.0 4.83e-01 100.0% 52.7%
4405715 604.5.1.8 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_2 0.65 45.0 3.24e-01 72.1% 72.9%
3692753 5086.1.1.12 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 0.65 57.0 4.78e-01 98.8% 66.7%
3605561 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 49.0 3.87e-01 79.1% 84.8%
4956384 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 47.0 3.71e-01 96.5% 41.5%
5060014 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.54 37.0 2.44e-01 72.1% 25.5%
5006655 5069.1.1.2 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.52 39.0 2.89e-01 80.2% 31.6%