ORF34

Euk-Vir

Callitrichine_gammaherpesvirus_3

ORF34__NP_733887__Callitrichine_gammaherpesvirus_3__106331

Identity

74.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› callitrichine_gammaherpesvirus_3

TaxID: 106331

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-50_133-156_235-277_470-488

PDB

Domain cluster: rep: capsid_portal_protein__YP_007969771__Elephantid_betaherpesvirus_1__146015__D20-46_218-259_441-461

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	55.4	5.40e-15	42.0%	7.7%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pihA00	1.20.1500.10	Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like	0.58	36.0	3.60e-01	73.9%	60.2%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	38.0	3.88e-01	88.2%	74.6%
2yevB01	1.10.287.90	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	38.0	4.28e-01	100.0%	96.8%
2dk8A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	23.0	2.92e-01	81.5%	69.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3192463	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.57	40.0	2.71e-01	71.4%	79.3%
3667265	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.57	28.0	2.60e-01	73.1%	37.9%
None	—		0.55	38.0	2.36e-01	71.4%	16.4%
3563174	627.1.1.1 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9	0.54	32.0	2.76e-01	95.0%	36.2%
3185570	3755.4.1.3 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N	0.52	46.0	4.10e-01	100.0%	76.0%
3443644	601.23.1.4 ↗	alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III	0.51	40.0	2.93e-01	82.4%	69.9%

D2 medium residues 51-132_157-234_538-566

PDB

Domain cluster: rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	68.3	6.70e-19	46.6%	14.6%
PF01763.23	Herpes_UL6	34.5	1.10e-08	45.5%	12.1%