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ORF39_gene_product
Euk-VirEquid_alphaherpesvirus_8
ORF39_gene_product__YP_006273019__Equid_alphaherpesvirus_8__39637
Identity
- Accession:
- YP_006273019 ↗
- Protein ID:
- ORF39_gene_product
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_8
TaxID: 39637
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-96
D2
medium
residues 209-312_410-441
Domain cluster:
rep: envelope_glycoprotein_H__YP_010087581__Cervid_alphaherpesvirus_3__2115790__D207-328
D3
medium
residues 313-409
Domain cluster:
rep: envelope_glycoprotein_H__YP_068353__Suid_alphaherpesvirus_1__10345__D240-339
D4
medium
residues 648-719
Domain cluster:
rep: envelope_glycoprotein_H__YP_009179315__Elephant_endotheliotropic_herpesvirus_4__548914__D571-650
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17488.8 best | Herpes_glycoH_C | 30.8 | 3.10e-07 | 88.9% | 41.1% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.98 | 70.0 | 5.49e-01 | 75.0% | 40.2% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.83 | 65.0 | 5.17e-01 | 94.4% | 44.4% |
| 7b7nH01 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.81 | 58.0 | 4.73e-01 | 75.0% | 44.9% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 45.0 | 3.90e-01 | 70.8% | 71.7% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 47.0 | 4.19e-01 | 76.4% | 90.8% |
| 1a8pA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 45.0 | 4.13e-01 | 75.0% | 94.7% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 46.0 | 3.79e-01 | 77.8% | 89.9% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 45.0 | 4.06e-01 | 75.0% | 93.8% |
| 6iw2A01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.62 | 42.0 | 3.45e-01 | 70.8% | 98.5% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.61 | 49.0 | 3.89e-01 | 87.5% | 61.5% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 44.0 | 3.93e-01 | 76.4% | 89.4% |
| 1qfjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 45.0 | 4.18e-01 | 79.2% | 96.7% |
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.59 | 41.0 | 3.66e-01 | 72.2% | 88.3% |
| 1g38A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 3.66e-01 | 100.0% | 57.4% |
| 3lpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 50.0 | 3.59e-01 | 100.0% | 46.0% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 44.0 | 4.11e-01 | 95.8% | 69.7% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 40.0 | 3.59e-01 | 77.8% | 93.0% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 45.0 | 3.68e-01 | 91.7% | 60.7% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 3.79e-01 | 95.8% | 89.0% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.54 | 48.0 | 3.84e-01 | 100.0% | 94.4% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 3.83e-01 | 98.6% | 94.7% |
| 4i4kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 47.0 | 3.83e-01 | 100.0% | 92.0% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.53 | 48.0 | 3.86e-01 | 100.0% | 94.9% |
| 2f8lA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 46.0 | 3.26e-01 | 100.0% | 51.5% |
| 3trkA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.42e-01 | 98.6% | 59.8% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 42.0 | 2.95e-01 | 88.9% | 69.1% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.20e-01 | 80.6% | 63.2% |
| 3cu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 43.0 | 3.41e-01 | 95.8% | 77.8% |
| 1ao8A00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.51 | 39.0 | 3.03e-01 | 81.9% | 98.8% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 3.62e-01 | 94.4% | 98.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119479 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.90 | 77.0 | 5.89e-01 | 90.3% | 46.3% |
| 1309233 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.82 | 69.0 | 5.34e-01 | 100.0% | 43.9% |
| 1936537 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.75 | 67.0 | 5.25e-01 | 98.6% | 49.7% |
| 2095502 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.74 | 62.0 | 4.90e-01 | 91.7% | 46.9% |
| 3964190 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.70 | 58.0 | 4.38e-01 | 88.9% | 50.3% |
| 4011994 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 46.0 | 3.99e-01 | 75.0% | 90.0% |
| 3976133 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 47.0 | 4.25e-01 | 76.4% | 86.3% |
| 3788725 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.63 | 45.0 | 3.89e-01 | 75.0% | 86.4% |
| 4938522 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 47.0 | 4.33e-01 | 79.2% | 95.6% |
| 3186464 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.62 | 45.0 | 3.64e-01 | 75.0% | 71.9% |
| 3611195 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.62 | 45.0 | 3.90e-01 | 76.4% | 88.2% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.60 | 48.0 | 3.83e-01 | 86.1% | 88.7% |
| 4452137 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.59 | 43.0 | 3.51e-01 | 76.4% | 89.6% |
| 4240841 | 220.1.1.190 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 | 0.57 | 42.0 | 3.42e-01 | 76.4% | 76.9% |
| 5052471 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.56 | 40.0 | 2.83e-01 | 75.0% | 55.7% |
| 4037272 | 243.1.1.90 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26525 | 0.55 | 49.0 | 4.05e-01 | 100.0% | 94.6% |
| 3316007 | 12.1.1.5 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amyl_C2 | 0.53 | 33.0 | 3.87e-01 | 84.7% | 95.8% |
| 3516806 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.52 | 40.0 | 2.72e-01 | 95.8% | 21.4% |
| 3799215 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.52 | 40.0 | 3.16e-01 | 86.1% | 69.7% |
| 3729827 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.52 | 44.0 | 3.30e-01 | 100.0% | 82.6% |
| 3415261 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.50 | 39.0 | 3.11e-01 | 86.1% | 80.0% |
| 4345620 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.50 | 40.0 | 2.89e-01 | 90.3% | 59.1% |