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ORF3
Euk-VirLeishmania_aethiopica_RNA_virus
ORF3__YP_009030003__Leishmania_aethiopica_RNA_virus__1497019
Identity
- Accession:
- YP_009030003 ↗
- Protein ID:
- ORF3
- Kingdom:
- euk
Quality
59.6
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Chrymotiviricetes›
Ghabrivirales›
Pseudototiviridae›
Leishmaniavirus›
Leishmania_aethiopica_RNA_virus
TaxID: 1497019
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 111-341
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05518.18 best | Totivirus_coat | 194.8 | 2.90e-57 | 100.0% | 34.9% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 24.0 | 3.06e-01 | 89.2% | 72.5% |
D2
high
residues 346-461
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05518.18 best | Totivirus_coat | 87.5 | 8.90e-25 | 100.0% | 19.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.54 | 44.0 | 4.18e-01 | 89.7% | 97.8% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 37.0 | 3.10e-01 | 75.0% | 67.8% |
| 6tejB01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.51 | 38.0 | 2.89e-01 | 81.0% | 88.9% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 37.0 | 3.51e-01 | 78.4% | 82.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593081 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 51.0 | 3.44e-01 | 89.7% | 81.6% |
| 5036002 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.53 | 38.0 | 3.54e-01 | 75.0% | 72.0% |
| 4961990 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.52 | 37.0 | 3.44e-01 | 75.9% | 63.2% |
| 3171614 | 5043.1.1.20 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › TMD_POM152 | 0.50 | 36.0 | 3.84e-01 | 75.0% | 86.0% |
D3
medium
residues 474-531_553-617