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ORF3
Euk-VirCarrot_Ch_virus_2
ORF3__YP_009103998__Carrot_Ch_virus_2__1425362
Identity
- Accession:
- YP_009103998 ↗
- Protein ID:
- ORF3
- Kingdom:
- euk
Quality
87.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Chordovirus›
Carrot_Ch_virus_2
TaxID: 1425362
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-114
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05892.18 best | Tricho_coat | 72.2 | 6.20e-20 | 97.3% | 55.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.72 | 52.0 | 5.82e-01 | 87.5% | 100.0% |
| 4gniA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.68 | 50.0 | 5.60e-01 | 83.9% | 100.0% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.63 | 47.0 | 5.10e-01 | 92.0% | 100.0% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 27.0 | 3.52e-01 | 100.0% | 70.8% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.57 | 45.0 | 3.72e-01 | 83.0% | 59.9% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 41.0 | 3.49e-01 | 82.1% | 62.1% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 31.0 | 3.54e-01 | 99.1% | 78.0% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 35.0 | 3.71e-01 | 100.0% | 76.0% |
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.52 | 38.0 | 3.14e-01 | 77.7% | 83.2% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 29.0 | 3.30e-01 | 83.9% | 72.8% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 43.0 | 3.46e-01 | 92.9% | 62.0% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.51 | 36.0 | 3.34e-01 | 72.3% | 85.0% |
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 28.0 | 2.78e-01 | 100.0% | 48.7% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 23.0 | 2.71e-01 | 100.0% | 60.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1117759 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.65 | 58.0 | 4.50e-01 | 100.0% | 69.8% |
| 223314 | 4322.1.1.0 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like | 0.62 | 52.0 | 4.82e-01 | 100.0% | 73.2% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 25.0 | 3.25e-01 | 100.0% | 65.5% |
| 4960057 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.61 | 40.0 | 3.72e-01 | 97.3% | 52.9% |
| 4517239 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.60 | 45.0 | 4.89e-01 | 96.4% | 91.6% |
| 5057424 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.59 | 51.0 | 4.10e-01 | 94.6% | 82.3% |
| 2764890 | 4322.1.1.1 ↗ | a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like › Flu_NP | 0.59 | 51.0 | 4.86e-01 | 100.0% | 81.3% |
| 3239600 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.57 | 35.0 | 4.33e-01 | 94.6% | 100.0% |
| 3601444 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 35.0 | 2.40e-01 | 100.0% | 17.5% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.56 | 44.0 | 3.48e-01 | 83.0% | 54.2% |
| 4948264 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.55 | 38.0 | 4.40e-01 | 93.8% | 100.0% |
| 4991070 | 304.8.1.43 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 | 0.55 | 31.0 | 3.83e-01 | 98.2% | 90.0% |
| 3615272 | 304.48.1.25 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 | 0.55 | 35.0 | 2.48e-01 | 70.5% | 19.0% |
| None | — | 0.54 | 38.0 | 2.82e-01 | 100.0% | 27.0% | |
| 3218069 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 25.0 | 3.15e-01 | 96.4% | 72.3% |
| 5058022 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.54 | 46.0 | 3.78e-01 | 95.5% | 51.0% |
| 4002369 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.53 | 39.0 | 4.23e-01 | 99.1% | 94.4% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.53 | 36.0 | 4.17e-01 | 92.9% | 100.0% |
| 5038015 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.53 | 34.0 | 2.29e-01 | 94.6% | 15.8% |
| 4931004 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.52 | 29.0 | 3.57e-01 | 98.2% | 90.8% |
| 4878594 | 2002.1.1.63 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 | 0.52 | 38.0 | 2.67e-01 | 75.9% | 29.6% |
| 4013535 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.52 | 45.0 | 3.26e-01 | 98.2% | 88.1% |
| 3851570 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.51 | 45.0 | 3.12e-01 | 100.0% | 27.8% |
| 3939904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 2.36e-01 | 74.1% | 19.6% |
| 3675128 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.51 | 30.0 | 3.63e-01 | 99.1% | 92.9% |
| 3264554 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 42.0 | 2.96e-01 | 89.3% | 87.6% |
| 3725746 | 4001.1.1.4 ↗ | a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB | 0.51 | 37.0 | 3.64e-01 | 100.0% | 69.6% |
| 3219752 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 39.0 | 2.81e-01 | 83.0% | 85.4% |
D2
high
residues 133-192
Domain cluster:
rep: coat_protein__YP_009552713__Lettuce_chordovirus_1__2200955__D189-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05892.18 best | Tricho_coat | 65.7 | 6.00e-18 | 100.0% | 28.7% |