←Back to structures

ORF40

Euk-Vir

Ovine_gammaherpesvirus_2

ORF40__YP_438163__Ovine_gammaherpesvirus_2__10398

Identity

Accession:
YP_438163 ↗
Protein ID:
ORF40
Kingdom:
euk

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Ovine_gammaherpesvirus_2

TaxID: 10398

Cluster

View cluster (61 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-139
PDB
Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 42.0 5.00e-01 100.0% 86.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 41.0 5.01e-01 95.0% 93.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 45.0 5.08e-01 94.2% 87.3%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 4.52e-01 100.0% 78.9%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 4.72e-01 92.8% 86.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 46.0 5.04e-01 98.6% 92.2%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 35.0 4.49e-01 98.6% 96.3%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 28.0 3.15e-01 87.8% 55.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 26.0 2.83e-01 87.8% 45.8%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.51 34.0 3.96e-01 92.1% 97.9%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 4.22e-01 100.0% 86.2%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 24.0 3.32e-01 84.2% 88.4%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 24.0 2.68e-01 74.8% 55.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 27.0 3.39e-01 92.1% 89.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036293 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 41.0 4.81e-01 95.0% 82.0%
5041944 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 42.0 4.80e-01 98.6% 81.9%
4940587 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 44.0 4.95e-01 100.0% 83.6%
5055028 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 39.0 4.40e-01 95.0% 78.2%
3441179 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.63 43.0 4.57e-01 100.0% 78.4%
3356276 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 44.0 4.65e-01 100.0% 80.0%
3611898 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.42e-01 97.1% 77.6%
3284948 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 36.0 4.43e-01 91.4% 97.6%
3392389 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 42.0 4.54e-01 97.1% 84.2%
1807441 243.1.1.37 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.59 28.0 3.15e-01 87.8% 55.0%
5049324 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 4.60e-01 92.8% 90.0%
4929844 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.57 36.0 4.29e-01 90.6% 96.7%
4937519 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.57 36.0 3.86e-01 90.6% 72.5%
3814481 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.34e-01 97.8% 86.4%
3271559 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 44.0 4.50e-01 89.9% 98.5%
3264983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 29.0 3.51e-01 92.8% 84.4%
2319280 2.1.1.72 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC 0.51 42.0 4.19e-01 100.0% 84.4%
143130 306.3.1.3 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DUF5750 0.51 34.0 3.96e-01 92.1% 97.9%
5022779 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 4.00e-01 92.8% 92.4%
D2 medium residues 140-327
PDB
Domain cluster: rep: ORF31__NP_733884__Callitrichine_gammaherpesvirus_3__106331__D132-145_190-351
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03324.21 best Herpes_HEPA 77.6 1.10e-21 46.8% 98.9%
D3 medium residues 328-497
PDB
Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289
D4 medium residues 498-634
PDB
Domain cluster: rep: helicase-primase_complex__NP_065539__Alcelaphine_gammaherpesvirus_1__35252__D46-100_112-175
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05774.17 best Herpes_heli_pri 62.1 8.80e-17 90.5% 86.6%