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ORF42

Euk-Vir

Ranid_herpesvirus_1

ORF42__YP_656697__Ranid_herpesvirus_1__85655

Identity

Accession:
YP_656697 ↗
Protein ID:
ORF42
Kingdom:
euk

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_1

TaxID: 85655

Cluster

View cluster (8 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 362-418
PDB
D2 high residues 427-594_663-741
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n4pC00 3.30.420.320 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain 0.88 69.0 7.37e-01 98.8% 90.4%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.73 41.0 5.48e-01 92.7% 99.3%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.72 59.0 6.15e-01 93.5% 90.7%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.68 58.0 6.03e-01 92.7% 93.9%
3dwlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 37.0 4.58e-01 98.4% 91.4%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 4.42e-01 73.7% 98.1%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 42.0 4.85e-01 98.4% 96.7%
3p5jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 4.67e-01 87.0% 93.2%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 28.0 3.91e-01 94.3% 92.6%
4d9gA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 24.0 3.37e-01 96.0% 78.2%
5ljwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 36.0 4.45e-01 93.9% 100.0%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 4.63e-01 87.4% 95.2%
2etjA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 34.0 3.69e-01 87.9% 76.2%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 4.29e-01 87.0% 97.4%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 4.46e-01 88.7% 96.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411385 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 40.0 4.60e-01 92.7% 81.1%
3470942 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 55.0 5.67e-01 95.1% 95.7%
3514061 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.63 43.0 5.08e-01 97.6% 98.3%
4372594 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.63 36.0 4.76e-01 76.1% 100.0%
3375728 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.62 36.0 4.72e-01 90.3% 99.3%
3169953 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.61 38.0 4.60e-01 91.5% 92.7%
3176331 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 38.0 4.61e-01 92.3% 94.5%
3881114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.59 43.0 4.37e-01 72.5% 98.8%
4052992 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.53 37.0 4.20e-01 90.7% 91.6%
4092268 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.53 35.0 4.07e-01 86.2% 92.0%
3686290 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.52 38.0 4.09e-01 87.4% 86.7%
4136596 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.52 28.0 3.22e-01 96.4% 68.1%
3733008 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.52 43.0 3.92e-01 86.6% 74.4%
3272720 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 25.0 3.54e-01 95.1% 100.0%
3626299 2484.1.1.16 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.50 42.0 4.03e-01 88.3% 75.8%
D3 medium residues 77-169
PDB
Domain cluster: rep: ORF62__YP_009447888__Ictalurid_herpesvirus_2__508441__D89-182
D4 medium residues 170-348
PDB
Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05127.22 best NAT10_TcmA_helicase 31.7 1.90e-07 76.5% 58.8%
D5 medium residues 595-614_633-662
PDB