←Back to structures
ORF43
Euk-VirMacaca_nemestrina_rhadinovirus_2
ORF43__YP_010084588__Macaca_nemestrina_rhadinovirus_2__123630
Identity
- Accession:
- YP_010084588 ↗
- Protein ID:
- ORF43
- Kingdom:
- euk
Quality
73.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Macaca_nemestrina_rhadinovirus_2
TaxID: 123630
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-239_512-554
Domain cluster:
rep: JM72__YP_238375__Macaca_fuscata_rhadinovirus__272551__D50-239
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01763.23 best | Herpes_UL6 | 179.3 | 1.60e-52 | 83.3% | 35.5% |
| PF01763.23 | Herpes_UL6 | 28.4 | 8.10e-07 | 17.9% | 7.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.67 | 27.0 | 3.81e-01 | 71.8% | 75.5% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 29.0 | 4.09e-01 | 75.2% | 93.1% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 23.0 | 3.60e-01 | 84.2% | 96.8% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.55 | 26.0 | 3.12e-01 | 82.9% | 64.0% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.52 | 32.0 | 3.64e-01 | 97.4% | 77.2% |
| 4cmyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 27.0 | 3.22e-01 | 76.9% | 69.9% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 28.0 | 3.70e-01 | 72.2% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3431182 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 30.0 | 3.79e-01 | 74.4% | 78.6% |
| 3440858 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.58 | 32.0 | 4.08e-01 | 75.6% | 91.9% |
| 4226581 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 33.0 | 3.52e-01 | 80.8% | 62.4% |
| 3368195 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 30.0 | 3.63e-01 | 73.5% | 78.1% |
| 3373083 | 206.1.1.83 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr | 0.53 | 31.0 | 2.47e-01 | 75.2% | 27.2% |
| 4119172 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 30.0 | 3.27e-01 | 81.2% | 63.7% |
| 4063163 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.53 | 25.0 | 2.88e-01 | 82.9% | 58.9% |
| 3645467 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.50 | 35.0 | 3.61e-01 | 97.4% | 72.2% |
D2
medium
residues 279-335_442-456