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ORF47
Euk-VirBovine_gammaherpesvirus_6
ORF47__YP_009042024__Bovine_gammaherpesvirus_6__1504288
Identity
- Accession:
- YP_009042024 ↗
- Protein ID:
- ORF47
- Kingdom:
- euk
Quality
70.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Macavirus›
Bovine_gammaherpesvirus_6
TaxID: 1504288
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 25-78
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11108.14 best | Phage_glycop_gL | 33.1 | 6.60e-08 | 100.0% | 52.0% |
CATH (66)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.79 | 55.0 | 4.91e-01 | 79.6% | 52.7% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.77 | 60.0 | 4.81e-01 | 100.0% | 45.5% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 56.0 | 4.46e-01 | 87.0% | 80.2% |
| 1sezA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 56.0 | 3.95e-01 | 90.7% | 51.7% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 4.98e-01 | 85.2% | 82.6% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 52.0 | 5.03e-01 | 83.3% | 85.5% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.67 | 52.0 | 3.57e-01 | 87.0% | 89.8% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 4.74e-01 | 83.3% | 80.3% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 51.0 | 4.83e-01 | 85.2% | 81.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 50.0 | 4.84e-01 | 85.2% | 85.7% |
| 4r6uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 56.0 | 4.84e-01 | 100.0% | 87.5% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 3.96e-01 | 81.5% | 55.3% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.65 | 51.0 | 3.79e-01 | 90.7% | 70.1% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 45.0 | 3.55e-01 | 75.9% | 35.1% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.64 | 53.0 | 3.42e-01 | 94.4% | 23.5% |
| 4gafB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 55.0 | 4.46e-01 | 98.1% | 87.7% |
| 2wllA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.64 | 50.0 | 3.76e-01 | 88.9% | 76.6% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 46.0 | 3.43e-01 | 77.8% | 29.6% |
| 2krtA01 | 3.10.450.270 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 49.0 | 4.06e-01 | 87.0% | 88.3% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.64 | 52.0 | 4.15e-01 | 96.3% | 49.2% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.63 | 50.0 | 3.95e-01 | 88.9% | 57.3% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 42.0 | 4.13e-01 | 70.4% | 66.7% |
| 2e50B02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.62 | 47.0 | 3.76e-01 | 83.3% | 70.3% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 46.0 | 3.29e-01 | 83.3% | 44.9% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 4.39e-01 | 100.0% | 90.2% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.61 | 49.0 | 3.85e-01 | 96.3% | 45.2% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.61 | 53.0 | 3.82e-01 | 100.0% | 84.1% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 47.0 | 3.64e-01 | 85.2% | 91.2% |
| 3o4oC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 52.0 | 4.22e-01 | 98.1% | 87.9% |
| 3oq3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.14e-01 | 92.6% | 89.0% |
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.61 | 49.0 | 3.96e-01 | 96.3% | 48.7% |
| 6dnzA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.61 | 50.0 | 3.53e-01 | 94.4% | 78.7% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 44.0 | 3.16e-01 | 79.6% | 27.2% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.61 | 42.0 | 3.65e-01 | 74.1% | 92.9% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.60 | 47.0 | 3.53e-01 | 88.9% | 75.3% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 3.80e-01 | 83.3% | 85.6% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.60 | 48.0 | 3.42e-01 | 92.6% | 78.0% |
| 1hxmB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 46.0 | 3.64e-01 | 88.9% | 88.8% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.59 | 42.0 | 4.34e-01 | 75.9% | 82.4% |
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 48.0 | 3.72e-01 | 92.6% | 92.1% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 47.0 | 3.45e-01 | 92.6% | 63.1% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.59 | 42.0 | 4.39e-01 | 77.8% | 93.8% |
| 7cymA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.59 | 49.0 | 4.03e-01 | 92.6% | 95.9% |
| 1lv9A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 44.0 | 4.29e-01 | 98.1% | 73.4% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.58 | 46.0 | 3.81e-01 | 88.9% | 53.0% |
| 2k50A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.38e-01 | 74.1% | 40.4% |
| 2xotA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 44.0 | 3.82e-01 | 83.3% | 72.1% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 3.79e-01 | 79.6% | 55.1% |
| 3vynA01 | 2.60.40.3780 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 47.0 | 4.12e-01 | 94.4% | 88.5% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.57 | 46.0 | 3.63e-01 | 94.4% | 60.2% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.57 | 49.0 | 3.48e-01 | 100.0% | 40.4% |
| 5uv6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 3.55e-01 | 81.5% | 76.1% |
| 3mj6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.67e-01 | 94.4% | 94.6% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 4.02e-01 | 92.6% | 81.0% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.30e-01 | 94.4% | 63.4% |
| 4iykA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.34e-01 | 87.0% | 94.9% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 45.0 | 3.31e-01 | 94.4% | 76.9% |
| 7skhB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 45.0 | 3.76e-01 | 94.4% | 90.7% |
| 4kc3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.67e-01 | 96.3% | 90.5% |
| 6s6yD02 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.25e-01 | 98.1% | 61.6% |
| 5fdyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.38e-01 | 94.4% | 89.4% |
| 1vwxo00 | 3.10.450.80 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.28e-01 | 85.2% | 81.7% |
| 8bxrA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.55e-01 | 92.6% | 86.3% |
| 2zshA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 35.0 | 2.23e-01 | 72.2% | 25.7% |
| 5vt8D02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 38.0 | 3.24e-01 | 83.3% | 90.9% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 34.0 | 2.93e-01 | 72.2% | 64.9% |
ECOD (84)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1936538 | 3146.1.1.3 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL | 0.77 | 60.0 | 4.81e-01 | 100.0% | 45.5% |
| 4205423 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.74 | 58.0 | 5.23e-01 | 100.0% | 62.7% |
| 2665702 | 3146.1.1.3 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL | 0.73 | 62.0 | 4.87e-01 | 100.0% | 45.2% |
| 5004672 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.72 | 57.0 | 4.38e-01 | 87.0% | 75.0% |
| 2095479 | 1170.1.2.3 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL | 0.72 | 64.0 | 5.06e-01 | 100.0% | 50.9% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 56.0 | 5.28e-01 | 85.2% | 86.2% |
| 3904562 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.71 | 62.0 | 5.51e-01 | 100.0% | 72.5% |
| 4990492 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 52.0 | 5.43e-01 | 79.6% | 100.0% |
| 4272864 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 46.0 | 3.58e-01 | 75.9% | 30.8% |
| 3966797 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.70 | 55.0 | 4.32e-01 | 87.0% | 85.2% |
| 3969410 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.70 | 47.0 | 3.72e-01 | 79.6% | 32.8% |
| 4957572 | 283.2.1.9 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator | 0.69 | 58.0 | 4.36e-01 | 94.4% | 92.6% |
| 3745926 | 220.1.1.23 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg | 0.69 | 60.0 | 4.35e-01 | 100.0% | 52.3% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.68 | 46.0 | 3.55e-01 | 70.4% | 33.3% |
| 3601320 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.68 | 57.0 | 4.64e-01 | 92.6% | 63.0% |
| 3520328 | 5.1.5.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BBS2_N, BBS2_Mid | 0.68 | 45.0 | 2.84e-01 | 83.3% | 13.7% |
| 4522298 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 5.21e-01 | 77.8% | 97.5% |
| 5030959 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.68 | 54.0 | 4.77e-01 | 88.9% | 63.7% |
| 4967706 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.67 | 55.0 | 4.18e-01 | 94.4% | 75.4% |
| 4930094 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.67 | 47.0 | 3.76e-01 | 75.9% | 38.1% |
| 3404941 | 220.1.1.15 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 | 0.67 | 55.0 | 3.91e-01 | 94.4% | 44.7% |
| 3857490 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 55.0 | 4.27e-01 | 94.4% | 64.8% |
| 3938484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 3.98e-01 | 85.2% | 65.0% |
| 3897496 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 56.0 | 4.86e-01 | 96.3% | 92.9% |
| 3857251 | 1134.1.2.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain | 0.66 | 51.0 | 4.09e-01 | 85.2% | 60.9% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.66 | 49.0 | 4.55e-01 | 81.5% | 82.9% |
| 4002646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 49.0 | 3.15e-01 | 85.2% | 16.9% |
| 4948342 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.66 | 41.0 | 2.90e-01 | 70.4% | 19.4% |
| 3670792 | 243.3.1.67 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C | 0.65 | 50.0 | 4.72e-01 | 83.3% | 87.7% |
| 3375457 | 4.1.1.159 ↗ | beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 | 0.65 | 49.0 | 4.41e-01 | 81.5% | 77.3% |
| 3979092 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.65 | 51.0 | 4.03e-01 | 87.0% | 83.5% |
| 4542063 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.65 | 54.0 | 4.13e-01 | 92.6% | 82.4% |
| 3903067 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.65 | 53.0 | 4.16e-01 | 94.4% | 64.8% |
| 4981503 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.65 | 46.0 | 3.84e-01 | 75.9% | 46.3% |
| 3258657 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.65 | 46.0 | 4.26e-01 | 75.9% | 60.0% |
| 4931879 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.65 | 46.0 | 3.79e-01 | 79.6% | 41.0% |
| 5051436 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.65 | 46.0 | 3.51e-01 | 75.9% | 34.4% |
| 5056990 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 43.0 | 3.52e-01 | 70.4% | 64.8% |
| 5062717 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.64 | 52.0 | 4.16e-01 | 92.6% | 80.0% |
| 3938023 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 54.0 | 4.42e-01 | 94.4% | 95.0% |
| 4176396 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.64 | 52.0 | 3.70e-01 | 96.3% | 31.9% |
| 5051437 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 45.0 | 3.63e-01 | 75.9% | 41.0% |
| 4030981 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 49.0 | 4.43e-01 | 88.9% | 82.5% |
| 4927632 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.63 | 51.0 | 3.84e-01 | 96.3% | 38.7% |
| 5074493 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 46.0 | 3.63e-01 | 79.6% | 38.3% |
| 3927151 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 50.0 | 3.41e-01 | 92.6% | 45.0% |
| 3998224 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.63 | 51.0 | 3.89e-01 | 96.3% | 42.1% |
| 4948168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 46.0 | 3.68e-01 | 79.6% | 40.0% |
| 4820757 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.63 | 44.0 | 3.59e-01 | 75.9% | 41.1% |
| 2774534 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.62 | 50.0 | 3.44e-01 | 96.3% | 27.7% |
| 3232194 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.62 | 50.0 | 3.46e-01 | 96.3% | 28.4% |
| 3914493 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.62 | 51.0 | 2.94e-01 | 96.3% | 12.0% |
| 3496242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 42.0 | 4.34e-01 | 72.2% | 90.0% |
| 3603992 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.61 | 49.0 | 4.11e-01 | 88.9% | 63.2% |
| 4880181 | 1061.1.1.1 ↗ | a+b two layers › gp120 inner domain › gp120 inner domain › gp120 inner domain › GP120 | 0.61 | 45.0 | 3.39e-01 | 79.6% | 32.1% |
| 3867704 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.61 | 50.0 | 3.16e-01 | 96.3% | 22.9% |
| 5044597 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.61 | 44.0 | 4.55e-01 | 77.8% | 92.0% |
| 3576928 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 50.0 | 4.12e-01 | 96.3% | 92.4% |
| 5055333 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.60 | 48.0 | 3.59e-01 | 96.3% | 35.2% |
| 3266046 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.60 | 44.0 | 4.29e-01 | 79.6% | 71.7% |
| 5041097 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.60 | 46.0 | 4.59e-01 | 85.2% | 96.4% |
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.60 | 41.0 | 4.27e-01 | 72.2% | 94.0% |
| 5020770 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.60 | 50.0 | 3.82e-01 | 100.0% | 47.1% |
| 3594465 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 4.28e-01 | 77.8% | 87.3% |
| 3827488 | 319.1.1.15 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 | 0.59 | 45.0 | 3.69e-01 | 87.0% | 52.7% |
| 3620302 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 47.0 | 3.06e-01 | 94.4% | 26.0% |
| 4982872 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 40.0 | 3.28e-01 | 74.1% | 35.5% |
| 4028728 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.58 | 39.0 | 3.98e-01 | 72.2% | 83.6% |
| 3911822 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.56 | 46.0 | 4.45e-01 | 100.0% | 81.7% |
| 3605574 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 43.0 | 3.13e-01 | 88.9% | 36.0% |
| 3195479 | 316.1.1.10 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap | 0.56 | 46.0 | 3.07e-01 | 100.0% | 35.5% |
| 3598139 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 44.0 | 3.41e-01 | 96.3% | 54.0% |
| 3650660 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 46.0 | 3.52e-01 | 94.4% | 88.8% |
| 4935879 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.56 | 44.0 | 3.78e-01 | 88.9% | 72.2% |
| 4041551 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.55 | 45.0 | 3.64e-01 | 98.1% | 75.8% |
| 3593683 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 41.0 | 2.64e-01 | 83.3% | 50.5% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 38.0 | 3.63e-01 | 77.8% | 72.9% |
| 4957407 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.54 | 41.0 | 3.32e-01 | 92.6% | 68.5% |
| 4935679 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.54 | 41.0 | 3.64e-01 | 90.7% | 90.0% |
| 4599318 | 2.1.1.299 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 | 0.54 | 38.0 | 3.43e-01 | 79.6% | 52.5% |
| 3489061 | 223.1.1.71 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 | 0.54 | 37.0 | 2.85e-01 | 77.8% | 78.1% |
| 4014828 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.74e-01 | 77.8% | 78.2% |
| 4985272 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 35.0 | 3.01e-01 | 75.9% | 39.0% |
| 4982873 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 35.0 | 2.99e-01 | 75.9% | 39.0% |
D2
medium
residues 79-138
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 44.0 | 4.50e-01 | 88.3% | 69.5% |
| 2btqB03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 49.0 | 5.10e-01 | 81.7% | 98.1% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 56.0 | 4.23e-01 | 100.0% | 90.1% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 46.0 | 4.66e-01 | 81.7% | 84.7% |
| 5azsC01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.62 | 46.0 | 2.88e-01 | 81.7% | 14.0% |
| 1rsoA01 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 47.0 | 4.93e-01 | 83.3% | 100.0% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 46.0 | 4.62e-01 | 81.7% | 83.3% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 50.0 | 4.24e-01 | 100.0% | 57.1% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 44.0 | 4.09e-01 | 76.7% | 64.9% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.59 | 48.0 | 4.00e-01 | 95.0% | 92.2% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.58 | 50.0 | 4.22e-01 | 100.0% | 89.4% |
| 2v4jB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.57 | 47.0 | 3.32e-01 | 90.0% | 86.9% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.54 | 47.0 | 3.61e-01 | 100.0% | 80.6% |
| 4nphA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 42.0 | 4.05e-01 | 96.7% | 97.3% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.53 | 45.0 | 4.09e-01 | 98.3% | 86.6% |
| 3dewA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 41.0 | 3.27e-01 | 95.0% | 75.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726422 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.69 | 58.0 | 4.71e-01 | 100.0% | 49.6% |
| 4488158 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.69 | 46.0 | 3.00e-01 | 73.3% | 15.8% |
| 3507856 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 58.0 | 3.94e-01 | 100.0% | 47.6% |
| 3652772 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 45.0 | 2.82e-01 | 73.3% | 12.7% |
| 3174678 | 633.15.1.3 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › SOG2 | 0.65 | 56.0 | 4.13e-01 | 100.0% | 58.8% |
| 5046133 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 45.0 | 4.01e-01 | 75.0% | 53.3% |
| 3998454 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 44.0 | 3.80e-01 | 88.3% | 46.3% |
| 3560925 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.62 | 45.0 | 3.69e-01 | 75.0% | 40.0% |
| 3997426 | 6.1.1.15 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ins145_P3_rec | 0.59 | 45.0 | 2.96e-01 | 80.0% | 18.8% |
| 3322308 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 51.0 | 4.30e-01 | 100.0% | 84.8% |
| 4009505 | 7079.1.1.1 ↗ | a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP | 0.59 | 50.0 | 4.82e-01 | 96.7% | 84.3% |
| 4007897 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.59 | 50.0 | 4.82e-01 | 96.7% | 84.3% |
| 3306934 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.57 | 50.0 | 4.13e-01 | 100.0% | 80.0% |
| 3595907 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 46.0 | 3.10e-01 | 100.0% | 22.1% |