ORF48

Euk-Vir

Human_gammaherpesvirus_8

ORF48__YP_001129400__Human_gammaherpesvirus_8__37296

Identity

68.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Human_gammaherpesvirus_8

TaxID: 37296

View cluster (8 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93_218-312

PDB

Domain cluster: rep: ORF48__YP_009042025__Bovine_gammaherpesvirus_6__1504288__D1-95_217-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05734.17 best	DUF832	119.1	3.10e-34	59.0%	44.7%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6t0bf00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.66	30.0	3.94e-01	73.9%	76.5%
5z62E00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.61	33.0	4.07e-01	76.1%	85.3%
4jxtA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	35.0	4.11e-01	78.2%	80.8%
3ro3A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.60	34.0	3.65e-01	79.3%	62.9%
3qqaA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	35.0	3.94e-01	70.7%	79.4%
4ap2B01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.53	36.0	4.18e-01	80.9%	97.0%
6a2aA01	1.50.10.130	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain	0.52	28.0	2.79e-01	83.5%	45.5%
4ffbC00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.51	35.0	3.27e-01	82.4%	55.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3408282	109.7.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › COX5A	0.64	34.0	4.20e-01	76.1%	82.5%
3813462	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	40.0	4.64e-01	80.9%	87.4%
3879191	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	31.0	3.62e-01	73.4%	65.4%
3313195	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	38.0	3.75e-01	94.1%	58.5%
3330849	109.4.1.31 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3	0.57	34.0	4.04e-01	77.1%	86.4%
4975376	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	37.0	3.96e-01	84.0%	73.9%
3314521	109.4.1.31 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3	0.57	34.0	3.78e-01	76.1%	74.8%
3167126	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	34.0	3.81e-01	83.5%	77.9%
4944462	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	27.0	3.30e-01	79.3%	78.3%

D2 medium residues 94-217

PDB

Domain cluster: rep: JM79__YP_238382__Macaca_fuscata_rhadinovirus__272551__D112-214

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05734.17 best	DUF832	180.1	6.50e-53	100.0%	53.9%