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ORF48
Euk-VirRetroperitoneal_fibromatosis-associated_herpesvirus
ORF48__YP_010084410__Retroperitoneal_fibromatosis-associated_herpesvirus__111469
Identity
- Accession:
- YP_010084410 ↗
- Protein ID:
- ORF48
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Retroperitoneal_fibromatosis-associated_herpesvirus
TaxID: 111469
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-94_247-299
Domain cluster:
rep: tegument_protein_G48__YP_009118437__Equid_gammaherpesvirus_5__10371__D17-78_235-290
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05734.17 best | DUF832 | 49.5 | 5.50e-13 | 69.5% | 30.3% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mqsA04 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 43.0 | 4.56e-01 | 93.2% | 80.6% |
| 2b6cA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.62 | 42.0 | 4.55e-01 | 93.2% | 83.5% |
| 6t0bf00 | 1.25.40.40 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI | 0.62 | 44.0 | 4.70e-01 | 94.1% | 87.3% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 40.0 | 3.80e-01 | 70.3% | 55.9% |
| 5z62E00 | 1.25.40.40 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI | 0.59 | 41.0 | 4.30e-01 | 90.7% | 78.0% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.58 | 42.0 | 4.17e-01 | 95.8% | 70.3% |
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.57 | 48.0 | 3.51e-01 | 92.4% | 41.2% |
| 4jxtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 46.0 | 4.45e-01 | 94.9% | 78.5% |
| 7e9uA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.57 | 46.0 | 3.17e-01 | 89.0% | 70.4% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 39.0 | 4.38e-01 | 94.1% | 97.7% |
| 5h28A01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.56 | 45.0 | 4.28e-01 | 89.8% | 72.4% |
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.54 | 39.0 | 3.65e-01 | 89.8% | 59.2% |
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 41.0 | 4.21e-01 | 94.1% | 85.6% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.54 | 43.0 | 3.65e-01 | 93.2% | 50.5% |
| 7qx4A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.53 | 47.0 | 3.76e-01 | 98.3% | 85.5% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 27.0 | 3.35e-01 | 91.5% | 83.3% |
| 2vsoF01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 43.0 | 3.58e-01 | 94.1% | 58.0% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 37.0 | 3.73e-01 | 74.6% | 92.6% |
| 8ai9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 38.0 | 4.00e-01 | 78.0% | 90.4% |
| 4q5rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 36.0 | 3.72e-01 | 72.9% | 99.1% |
| 6u3wB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 45.0 | 3.40e-01 | 100.0% | 67.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3883758 | 109.4.1.938 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CKAP2_C | 0.69 | 47.0 | 5.21e-01 | 93.2% | 87.4% |
| 4940160 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.64 | 48.0 | 3.85e-01 | 80.5% | 63.7% |
| 3595433 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 47.0 | 3.99e-01 | 93.2% | 47.4% |
| 3490147 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 46.0 | 3.75e-01 | 77.1% | 67.3% |
| 4423180 | 3736.1.1.2 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD | 0.61 | 44.0 | 4.65e-01 | 95.8% | 85.7% |
| 3408282 | 109.7.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › COX5A | 0.59 | 44.0 | 4.52e-01 | 93.2% | 81.6% |
| 3217071 | 109.4.1.901 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 | 0.59 | 44.0 | 4.52e-01 | 95.8% | 82.7% |
| 4437742 | 4198.1.1.2 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat | 0.57 | 45.0 | 3.61e-01 | 83.9% | 61.3% |
| 3692533 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 4.36e-01 | 93.2% | 92.1% |
| 3925020 | 109.4.1.31 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 | 0.56 | 47.0 | 4.58e-01 | 94.1% | 83.1% |
| 5004436 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 41.0 | 3.65e-01 | 77.1% | 64.7% |
| 5061832 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 47.0 | 3.87e-01 | 93.2% | 61.9% |
| 3184806 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.54 | 49.0 | 3.43e-01 | 100.0% | 81.3% |
| 3192679 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 4.05e-01 | 94.1% | 70.2% |
| 3910391 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.52 | 41.0 | 4.13e-01 | 95.8% | 82.1% |
D2
high
residues 104-244
Domain cluster:
rep: JM79__YP_238382__Macaca_fuscata_rhadinovirus__272551__D112-214
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05734.17 best | DUF832 | 135.6 | 2.70e-39 | 100.0% | 60.5% |