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ORF4
Euk-VirLake_Sinai_Virus_TO
ORF4__YP_009388504__Lake_Sinai_Virus_TO__1983564
Identity
- Accession:
- YP_009388504 ↗
- Protein ID:
- ORF4
- Kingdom:
- euk
Quality
73.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Magsaviricetes›
Nodamuvirales›
Sinhaliviridae›
Sinaivirus›
Lake_Sinai_Virus_TO
TaxID: 1983564
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-128
Domain cluster:
rep: hypothetical_protein__YP_009336680__Hubei_virga-like_virus_16__1923331__D48-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22532.3 best | WIV_dom | 97.7 | 3.90e-28 | 69.8% | 98.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c7uA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.68 | 33.0 | 3.97e-01 | 100.0% | 68.3% |
| 1a2fA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.59 | 46.0 | 4.28e-01 | 84.4% | 81.8% |
| 3v97A03 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.54 | 43.0 | 4.60e-01 | 91.7% | 96.5% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 47.0 | 3.46e-01 | 100.0% | 64.7% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 32.0 | 3.20e-01 | 91.7% | 59.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688598 | 3398.1.1.2 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › prok_STING | 0.68 | 59.0 | 5.10e-01 | 96.9% | 96.0% |
| 3467284 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.58 | 46.0 | 4.43e-01 | 100.0% | 75.0% |
| 4991709 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.57 | 41.0 | 3.23e-01 | 76.0% | 81.4% |
| 3739299 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.57 | 32.0 | 2.93e-01 | 100.0% | 40.0% |
| 3171587 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.56 | 36.0 | 2.33e-01 | 96.9% | 14.6% |
| 4982525 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 40.0 | 3.11e-01 | 100.0% | 34.3% |
| 3787887 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.55 | 37.0 | 4.11e-01 | 92.7% | 89.0% |
| 3487067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 4.44e-01 | 100.0% | 81.7% |
| 5004463 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 37.0 | 2.59e-01 | 72.9% | 64.1% |
| 4014310 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.51 | 45.0 | 2.91e-01 | 100.0% | 34.1% |
| 4475641 | 2003.1.5.363 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Methyltransf_11, Methyltrans_SAM | 0.50 | 44.0 | 2.71e-01 | 94.8% | 24.3% |