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ORF52

Euk-Vir

Retroperitoneal_fibromatosis-associated_herpesvirus

ORF52__YP_010084415__Retroperitoneal_fibromatosis-associated_herpesvirus__111469

Identity

Accession:
YP_010084415 ↗
Protein ID:
ORF52
Kingdom:
euk

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Retroperitoneal_fibromatosis-associated_herpesvirus

TaxID: 111469

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-102
PDB
Domain cluster: rep: ORF52__YP_009173931__Felis_catus_gammaherpesvirus_1__1452540__D51-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05812.18 best Herpes_BLRF2 46.5 5.30e-12 100.0% 45.4%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e98B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 58.0 4.12e-01 89.3% 29.3%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.70 60.0 4.70e-01 92.9% 76.1%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 44.0 2.69e-01 71.4% 11.5%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 3.83e-01 83.9% 42.9%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 5.18e-01 98.2% 77.8%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 54.0 3.89e-01 94.6% 75.2%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 46.0 2.98e-01 98.2% 38.7%
1k99A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 39.0 3.47e-01 83.9% 62.6%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 41.0 3.39e-01 94.6% 96.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7704 4302.1.1.2 ↗ a+b duplicates or obligate multimers › BLRF2-like › BLRF2-like › BLRF2-like › Herpes_BLRF2 0.93 86.0 7.31e-01 100.0% 64.4%
1563561 4302.1.1.1 ↗ a+b duplicates or obligate multimers › BLRF2-like › BLRF2-like › BLRF2-like › Herpes_UL49_2 0.85 76.0 6.43e-01 100.0% 68.9%
3511292 325.1.7.19 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Rrp15p 0.81 71.0 6.60e-01 98.2% 84.3%
3805996 192.10.1.7 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › HisKA 0.78 65.0 5.83e-01 89.3% 72.0%
5029642 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.78 62.0 5.22e-01 87.5% 53.7%
4500040 833.1.1.1 ↗ a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin-I3 0.77 62.0 4.38e-01 87.5% 31.9%
4463756 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 62.0 5.74e-01 87.5% 75.7%
3605151 1189.1.1.3 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP 0.76 63.0 4.20e-01 91.1% 86.8%
3605105 1189.1.1.3 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP 0.73 60.0 4.04e-01 91.1% 84.8%
4987972 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.72 60.0 3.85e-01 91.1% 21.3%
4093115 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.64 49.0 3.30e-01 87.5% 25.8%
4054492 11.1.4.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › P_gingi_FimA 0.60 46.0 3.31e-01 83.9% 60.6%
4306433 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 46.0 3.31e-01 83.9% 60.6%
3788788 2485.1.1.51 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.59 47.0 3.10e-01 87.5% 61.2%
3897557 311.1.1.2 ↗ a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto 0.59 42.0 3.27e-01 76.8% 35.0%
3519735 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 49.0 3.58e-01 92.9% 74.7%
2504401 2003.1.1.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.57 37.0 3.35e-01 92.9% 51.4%