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ORF52

Euk-Vir

Ranid_herpesvirus_2

ORF52__YP_656560__Ranid_herpesvirus_2__389214

Identity

Accession:
YP_656560 ↗
Protein ID:
ORF52
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_2

TaxID: 389214

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-143
PDB
Domain cluster: rep: ORF51__YP_656559__Ranid_herpesvirus_2__389214__D24-130
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dniC02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 43.0 4.74e-01 78.2% 100.0%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 42.0 4.47e-01 86.6% 92.0%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 39.0 3.08e-01 84.9% 38.0%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 4.09e-01 100.0% 87.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071659 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 35.0 3.75e-01 93.3% 75.0%
D2 medium residues 155-248
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.67 50.0 5.14e-01 93.6% 85.1%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.66 34.0 4.59e-01 72.3% 100.0%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 42.0 4.45e-01 90.4% 72.6%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 45.0 4.89e-01 86.2% 97.2%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.63 43.0 3.82e-01 100.0% 49.3%
2bbrA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 45.0 4.67e-01 77.7% 85.4%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.61 41.0 4.71e-01 72.3% 100.0%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 46.0 4.61e-01 91.5% 78.0%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 46.0 4.39e-01 80.9% 97.3%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 43.0 4.21e-01 78.7% 97.1%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 43.0 3.25e-01 78.7% 41.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.57 31.0 3.45e-01 86.2% 64.9%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 36.0 4.01e-01 86.2% 83.6%
3gcgB00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.56 39.0 3.33e-01 71.3% 94.7%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.55 47.0 3.77e-01 95.7% 85.4%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 4.01e-01 89.4% 70.9%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.55 40.0 3.66e-01 76.6% 92.7%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 35.0 3.97e-01 100.0% 91.2%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.53 44.0 4.01e-01 89.4% 70.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 41.0 4.35e-01 87.2% 98.7%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.52 37.0 3.10e-01 76.6% 63.1%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 39.0 4.08e-01 80.9% 88.1%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 42.0 3.81e-01 98.9% 65.9%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 39.0 3.85e-01 85.1% 94.1%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 29.0 3.32e-01 85.1% 76.5%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.50 35.0 3.51e-01 95.7% 71.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4649575 130.1.1.45 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.66 37.0 4.36e-01 83.0% 83.3%
3408466 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.66 47.0 5.04e-01 73.4% 96.2%
3916150 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.65 49.0 5.08e-01 93.6% 87.1%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 39.0 4.51e-01 86.2% 89.2%
3802179 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 47.0 4.29e-01 80.9% 77.6%
3610347 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.62 42.0 4.44e-01 71.3% 78.8%
3174717 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.62 43.0 4.69e-01 72.3% 93.3%
3997224 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 45.0 3.98e-01 78.7% 66.4%
3785340 7581.1.1.3 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.59 48.0 2.86e-01 89.4% 94.2%
3810243 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.59 42.0 4.31e-01 74.5% 92.2%
4945681 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.59 35.0 4.26e-01 78.7% 100.0%
3285506 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 44.0 4.30e-01 80.9% 100.0%
5030514 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.58 32.0 4.03e-01 93.6% 100.0%
4175163 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 43.0 3.27e-01 77.7% 82.2%
5032198 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 35.0 4.18e-01 74.5% 100.0%
4439788 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.57 42.0 3.24e-01 78.7% 82.7%
3839858 3962.1.1.4 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › ISP_coupler 0.56 41.0 3.72e-01 77.7% 70.4%
3830185 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.56 34.0 4.04e-01 74.5% 95.0%
4027747 4982.1.1.0 ↗ alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain 0.54 37.0 3.44e-01 79.8% 55.0%
3593968 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 36.0 3.67e-01 84.0% 71.1%
3410177 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 32.0 3.16e-01 76.6% 57.0%
D3 medium residues 249-312
PDB