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ORF52_gene_product

Euk-Vir

Equid_alphaherpesvirus_8

ORF52_gene_product__YP_006273032__Equid_alphaherpesvirus_8__39637

Identity

Accession:: YP_006273032 ↗
Protein ID:: ORF52_gene_product
Kingdom:: euk

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_8

TaxID: 39637

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-146

PDB

Domain cluster: rep: envelope_glycoprotein_M__NP_045269__Equid_alphaherpesvirus_4__10331__D27-57_97-168

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	118.1	6.50e-34	96.0%	31.6%

D2 medium residues 147-270

PDB

Domain cluster: rep: BBRF3__YP_001129479__Human_herpesvirus_4_type_2__12509__D131-232

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	127.0	1.30e-36	100.0%	36.7%

D3 medium residues 271-331

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	48.4	1.10e-12	100.0%	16.4%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.71	51.0	4.75e-01	100.0%	61.3%
8fbnB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.71	56.0	3.86e-01	90.2%	24.3%
1vx7301	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.70	57.0	5.38e-01	88.5%	81.1%
3fxdC00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.69	47.0	5.07e-01	72.1%	90.0%
2wyhB04	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.69	54.0	4.63e-01	86.9%	54.5%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	57.0	5.43e-01	91.8%	87.3%
6t0bc01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.67	54.0	5.05e-01	91.8%	75.6%
5lb3B02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	55.0	3.83e-01	100.0%	92.1%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.66	47.0	3.63e-01	77.0%	33.1%
1k74D00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.62	54.0	3.58e-01	100.0%	67.3%
2paqA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.62	51.0	3.66e-01	90.2%	74.0%
2gk6A03	6.10.140.1240	Special › Helix non-globular › Helix Hairpins ›	0.61	41.0	4.48e-01	80.3%	86.0%
2kkmA01	1.20.1440.170	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like	0.61	49.0	4.04e-01	95.1%	68.8%
2gv9A05	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.59	43.0	4.35e-01	85.2%	83.1%
2jx4A01	6.10.140.460	Special › Helix non-globular › Helix Hairpins ›	0.54	38.0	4.12e-01	78.7%	100.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4010296	632.1.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid	0.72	59.0	5.04e-01	90.2%	61.0%
3956796	101.1.2.49 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C	0.72	63.0	4.47e-01	98.4%	36.2%
3529270	632.1.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid	0.69	55.0	4.72e-01	86.9%	57.9%
4797659	632.1.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid	0.67	52.0	5.45e-01	90.2%	92.7%
5071125	632.1.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid	0.66	51.0	4.38e-01	86.9%	50.5%
3585354	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.66	55.0	4.91e-01	96.7%	66.7%
5050286	632.1.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid	0.66	52.0	4.48e-01	90.2%	54.0%
3249513	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.65	47.0	5.10e-01	77.0%	96.0%
3470995	109.4.1.470 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2	0.65	55.0	3.37e-01	100.0%	15.7%
3231045	101.1.1.117 ↗	alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2	0.61	52.0	4.45e-01	98.4%	57.1%
3491182	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.61	52.0	4.02e-01	100.0%	67.8%

D4 medium residues 332-387

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01528.23 best	Herpes_glycop	37.7	1.90e-09	78.6%	13.1%