ORF53

Euk-Vir

Ranid_herpesvirus_2

ORF53__YP_656561__Ranid_herpesvirus_2__389214

Identity

76.3 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_2

TaxID: 389214

View cluster (4 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-143

PDB

Domain cluster: rep: ORF51__YP_656559__Ranid_herpesvirus_2__389214__D24-130

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3if8B02	1.20.58.730	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	31.0	3.39e-01	72.9%	61.0%
8b70A01	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.53	45.0	3.12e-01	92.4%	78.5%
1bccH00	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.53	28.0	3.49e-01	80.5%	89.4%
1xx7A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.52	43.0	3.82e-01	90.7%	90.1%
7dswA01	1.20.1530.20	Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold ›	0.52	45.0	3.21e-01	100.0%	78.3%
1z67A00	1.10.10.690	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YidB-like	0.52	36.0	3.53e-01	93.2%	65.4%
1foeA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.52	41.0	3.52e-01	87.3%	94.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3938965	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.53	38.0	2.99e-01	73.7%	56.7%
3335756	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.52	45.0	4.10e-01	94.9%	75.5%

D2 high residues 152-298

PDB

Domain cluster: rep: ORF25__YP_656533__Ranid_herpesvirus_2__389214__D1-141

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xg7A02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.52	41.0	4.14e-01	89.1%	85.3%
3dxlA02	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.52	37.0	3.72e-01	88.4%	71.1%
7f16R01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	38.0	3.15e-01	78.9%	91.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3959922	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	25.0	2.89e-01	70.7%	50.9%
3937465	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.53	39.0	3.47e-01	76.2%	74.9%
4610814	185.1.1.1 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl	0.52	25.0	2.82e-01	100.0%	57.4%
3728030	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.52	42.0	3.62e-01	88.4%	93.9%
4384791	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	36.0	3.18e-01	71.4%	74.3%
3593318	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	26.0	3.01e-01	81.0%	65.7%