ORF54_gene_product

Euk-Vir

Equid_alphaherpesvirus_8

ORF54_gene_product__YP_006273034__Equid_alphaherpesvirus_8__39637

Identity

83.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_8

TaxID: 39637

View cluster (61 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-145

PDB

Domain cluster: rep: helicase-primase_subunit__YP_068368__Suid_alphaherpesvirus_1__10345__D1-121

D2 medium residues 146-162_200-347

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009010994__Chimpanzee_herpesvirus_strain_105640__332937__D147-229_251-271_308-352

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	91.9	3.70e-26	59.4%	97.8%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qi2A02	3.30.420.60	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2	0.57	38.0	4.45e-01	98.8%	99.1%
2rcqA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.56	36.0	3.83e-01	88.5%	72.3%
1g29102	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.56	16.0	2.91e-01	82.4%	82.2%
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.56	17.0	2.65e-01	86.7%	60.3%
4gniA03	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.55	30.0	3.94e-01	85.5%	100.0%
3d2fA03	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.55	30.0	3.88e-01	87.9%	94.6%
1fr3A00	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.54	17.0	2.60e-01	83.0%	62.7%
1atrA03	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.53	29.0	3.74e-01	84.8%	96.6%
2xzmK00	3.30.420.80	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14	0.51	34.0	3.71e-01	90.3%	79.3%

D3 medium residues 380-395_423-476

PDB

Domain cluster: rep: UL8__YP_003084415__Anatid_alphaherpesvirus_1__104388__D442-496

D4 medium residues 396-422_477-587

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

D5 medium residues 588-751

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772