ORF56

Euk-Vir

Human_gammaherpesvirus_8

ORF56__YP_001129409__Human_gammaherpesvirus_8__37296

Identity

88.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Human_gammaherpesvirus_8

TaxID: 37296

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 349-421

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2damA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.64	33.0	3.46e-01	82.2%	52.2%
2m3aA00	1.10.10.1900	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like	0.60	37.0	3.90e-01	86.3%	68.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4257906	103.2.1.2 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone	0.57	41.0	3.86e-01	76.7%	91.1%
3288380	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.56	44.0	3.65e-01	89.0%	83.6%
4863453	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	39.0	3.26e-01	82.2%	75.4%

D2 high residues 714-838

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	91.8	2.80e-26	60.0%	97.3%

D3 medium residues 1-158

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D4 medium residues 159-253

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_401662__Human_gammaherpesvirus_4__10376__D153-223

D5 medium residues 254-341

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m1tA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.60	47.0	3.42e-01	95.5%	28.3%
2fcwA00	1.20.81.10	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain	0.59	45.0	4.27e-01	81.8%	90.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3938135	4193.1.1.0 ↗	alpha arrays › RUN domain › RUN domain › RUN domain	0.56	35.0	2.93e-01	73.9%	36.1%
1682983	3998.1.1.1 ↗	alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29	0.56	37.0	3.74e-01	76.1%	67.8%
3566226	196.1.1.1 ↗	alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS	0.51	40.0	3.61e-01	85.2%	91.2%

D6 medium residues 437-488

PDB

Domain cluster: representative

D7 medium residues 489-552_566-713

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194