ORF56

Euk-Vir

Felis_catus_gammaherpesvirus_1

ORF56__YP_009173935__Felis_catus_gammaherpesvirus_1__1452540

Identity

88.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Felid_gammaherpesvirus_1

TaxID: 1452540

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 241-319

PDB

Domain cluster: rep: E70__YP_007016467__Murid_betaherpesvirus_8__1261657__D218-274

D2 high residues 362-434

PDB

Domain cluster: rep: ORF56__YP_001129409__Human_gammaherpesvirus_8__37296__D349-421

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5uiyA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.60	43.0	3.85e-01	78.1%	96.3%
2m3aA00	1.10.10.1900	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like	0.59	37.0	3.84e-01	87.7%	68.7%
4at7A01	1.10.1410.40	Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain ›	0.58	43.0	3.33e-01	82.2%	69.8%
3viuA04	3.90.650.10	Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain	0.53	39.0	3.04e-01	80.8%	69.9%
4rv9A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	39.0	2.90e-01	82.2%	87.1%
4a15A04	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	35.0	2.60e-01	71.2%	68.1%
2ef1A01	1.20.82.10	Mainly Alpha › Up-down Bundle › ADP Ribosyl Cyclase; Chain A, domain 1 › ADP Ribosyl Cyclase; Chain A, domain 1	0.50	41.0	3.52e-01	95.9%	71.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2081535	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.56	40.0	3.32e-01	75.3%	45.9%
3288380	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.56	41.0	3.45e-01	82.2%	100.0%
4316025	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.54	40.0	2.93e-01	80.8%	29.5%
5022802	3290.1.1.1 ↗	alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto	0.52	40.0	3.84e-01	84.9%	85.9%
4641131	2006.1.1.44 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like	0.52	42.0	3.16e-01	98.6%	91.7%
3517704	2007.2.3.24 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561	0.52	41.0	2.69e-01	93.2%	86.7%
5049986	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	36.0	3.39e-01	95.9%	58.9%

D3 high residues 444-706

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194

D4 high residues 719-845

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	84.7	4.70e-24	59.1%	97.3%

D5 medium residues 16-166

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D6 medium residues 167-240

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_401662__Human_gammaherpesvirus_4__10376__D153-223