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ORF58

Euk-Vir

Ranid_herpesvirus_2

ORF58__YP_656566__Ranid_herpesvirus_2__389214

Identity

Accession:
YP_656566 ↗
Protein ID:
ORF58
Kingdom:
euk

Quality

67.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_2

TaxID: 389214

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-125
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.76 65.0 6.64e-01 96.0% 93.8%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.76 61.0 6.34e-01 87.0% 93.5%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.73 59.0 6.22e-01 99.0% 97.8%
1cy5A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 57.0 5.94e-01 100.0% 92.4%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 58.0 5.74e-01 100.0% 83.0%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.71 51.0 5.64e-01 76.0% 100.0%
4a2qA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.67 53.0 5.49e-01 98.0% 91.4%
1ddqD02 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.65 46.0 3.85e-01 74.0% 95.6%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.65 50.0 5.30e-01 84.0% 100.0%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 50.0 5.05e-01 97.0% 85.0%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 49.0 5.13e-01 95.0% 96.7%
1za0A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 48.0 3.64e-01 86.0% 94.2%
2mn4A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 47.0 4.87e-01 95.0% 93.6%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 40.0 4.47e-01 88.0% 93.5%
2d96A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 47.0 4.87e-01 95.0% 100.0%
3ajcA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.57 39.0 3.92e-01 72.0% 98.1%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.56 38.0 3.60e-01 71.0% 76.0%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 36.0 4.15e-01 86.0% 100.0%
2e2oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 48.0 4.12e-01 100.0% 83.3%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.54 34.0 3.87e-01 91.0% 86.5%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 39.0 4.12e-01 86.0% 95.2%
1sqmA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.52 38.0 3.35e-01 76.0% 68.5%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.90e-01 94.0% 91.2%
4kx7A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.50 37.0 2.68e-01 78.0% 29.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271277 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.80 66.0 6.92e-01 100.0% 97.8%
3549109 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.78 64.0 6.62e-01 100.0% 93.7%
3853545 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.77 66.0 6.60e-01 96.0% 91.0%
3885137 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.75 61.0 6.37e-01 92.0% 95.6%
3485337 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.74 58.0 5.84e-01 96.0% 84.0%
3924858 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.72 58.0 5.73e-01 100.0% 81.9%
3617526 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.69 58.0 5.77e-01 100.0% 88.6%
4045754 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.67 55.0 5.47e-01 91.0% 94.3%
3771567 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.63 51.0 4.95e-01 89.0% 81.8%
3799936 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.62 52.0 5.11e-01 100.0% 85.5%
5036044 109.4.1.124 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_alkylation 0.61 44.0 4.09e-01 75.0% 91.2%
3648311 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 3.46e-01 72.0% 82.6%
3987836 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.55 38.0 4.22e-01 86.0% 100.0%
3167899 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.55 43.0 4.13e-01 100.0% 73.9%
3594998 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 40.0 3.79e-01 80.0% 88.8%
3393603 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 38.0 3.20e-01 94.0% 41.7%
167148 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.52 39.0 4.12e-01 86.0% 95.2%
3599701 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 41.0 3.27e-01 85.0% 93.0%
4289290 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.51 37.0 3.41e-01 76.0% 77.7%
D2 high residues 140-284
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.65 36.0 4.04e-01 76.6% 69.1%
3pm8B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 29.0 3.56e-01 78.6% 77.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4483086 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 32.0 3.84e-01 75.9% 80.0%
3742639 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 36.0 3.61e-01 88.3% 66.0%
2323790 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.51 32.0 3.18e-01 80.7% 58.8%
3932619 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 32.0 3.32e-01 86.2% 66.7%