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ORF59
Euk-VirCallitrichine_gammaherpesvirus_3
ORF59__NP_733913__Callitrichine_gammaherpesvirus_3__106331
Identity
- Accession:
- NP_733913 ↗
- Protein ID:
- ORF59
- Kingdom:
- euk
Quality
63.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
callitrichine_gammaherpesvirus_3
TaxID: 106331
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-79
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06112.17 best | Herpes_capsid | 48.2 | 1.90e-12 | 98.5% | 35.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.74 | 59.0 | 4.66e-01 | 89.2% | 46.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1498228 | 3942.1.1.1 ↗ | alpha bundles › Smallest capsid protein (SCP) › Smallest capsid protein (SCP) › Smallest capsid protein (SCP) › Herpes_capsid | 0.80 | 67.0 | 6.22e-01 | 100.0% | 74.1% |
| 3609066 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 49.0 | 4.02e-01 | 72.3% | 40.0% |
| 3287031 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 52.0 | 4.61e-01 | 84.6% | 56.8% |
| 4507296 | 5055.1.1.7 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › TADA2A-like_3rd | 0.64 | 50.0 | 4.69e-01 | 84.6% | 68.8% |
| 4958743 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 55.0 | 4.55e-01 | 100.0% | 90.4% |
| 3208308 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 45.0 | 3.21e-01 | 84.6% | 51.4% |
| 3938944 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 42.0 | 3.33e-01 | 89.2% | 65.0% |