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ORF59

Euk-Vir

Ovine_gammaherpesvirus_2

ORF59__YP_438183__Ovine_gammaherpesvirus_2__10398

Identity

Accession:
YP_438183 ↗
Protein ID:
ORF59
Kingdom:
euk

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Ovine_gammaherpesvirus_2

TaxID: 10398

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-140
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04929.18 best Herpes_DNAp_acc 172.5 2.20e-50 98.6% 34.5%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.92 89.0 6.64e-01 100.0% 48.7%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.91 85.0 6.41e-01 100.0% 46.3%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 70.0 5.52e-01 99.3% 50.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 58.0 4.72e-01 97.8% 47.4%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 55.0 5.93e-01 100.0% 96.6%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 55.0 4.66e-01 100.0% 50.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 56.0 4.99e-01 100.0% 59.3%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 56.0 5.85e-01 97.1% 95.2%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 55.0 5.89e-01 100.0% 98.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 54.0 4.82e-01 99.3% 59.1%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 61.0 4.88e-01 99.3% 50.9%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.62 30.0 3.51e-01 100.0% 63.0%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 22.0 3.00e-01 98.6% 66.7%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 42.0 3.61e-01 99.3% 50.2%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 29.0 3.39e-01 83.5% 76.9%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.27e-01 98.6% 70.4%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 28.0 2.76e-01 92.8% 46.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1082803 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.92 89.0 8.54e-01 100.0% 94.8%
1178585 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.91 85.0 8.47e-01 100.0% 94.3%
3397928 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 62.0 6.56e-01 97.8% 97.6%
3719897 227.1.1.18 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.73 58.0 6.13e-01 96.4% 93.6%
3244229 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 60.0 6.34e-01 100.0% 98.4%
4650779 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 58.0 6.09e-01 100.0% 93.6%
4437554 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.72 57.0 6.02e-01 100.0% 93.6%
3936914 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 61.0 6.27e-01 100.0% 96.2%
4995744 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 56.0 5.91e-01 100.0% 92.7%
4500973 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.71 56.0 5.93e-01 100.0% 95.1%
3625038 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 62.0 6.22e-01 98.6% 93.6%
4542774 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 56.0 5.94e-01 100.0% 96.7%
4360456 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 56.0 5.79e-01 100.0% 90.8%
3346536 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.70 60.0 5.99e-01 99.3% 89.7%
4336156 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 55.0 5.87e-01 98.6% 96.7%
4508401 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 57.0 5.94e-01 100.0% 96.0%
3722114 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.69 63.0 6.10e-01 99.3% 94.8%
426904 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.69 54.0 5.68e-01 100.0% 93.5%
3787700 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.68 62.0 6.04e-01 100.0% 99.4%
3719938 227.1.1.17 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.68 59.0 5.98e-01 100.0% 95.0%
3406311 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.67 61.0 5.89e-01 98.6% 91.6%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.67 61.0 5.99e-01 98.6% 92.7%
3507498 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.67 60.0 5.91e-01 98.6% 92.0%
3789625 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.67 58.0 5.92e-01 100.0% 97.0%
3598259 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.64 55.0 5.58e-01 97.1% 95.6%
3367557 4099.1.1.41 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FmiP_Thoc5 0.63 31.0 3.18e-01 99.3% 48.1%
3247033 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 42.0 4.00e-01 99.3% 65.0%
3979569 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 37.0 4.13e-01 80.6% 87.3%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 26.0 3.26e-01 81.3% 76.0%
3199715 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 40.0 3.57e-01 77.0% 89.0%
4524604 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.53 36.0 3.56e-01 90.6% 62.6%
D2 high residues 155-294
PDB
Domain cluster: rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04929.18 best Herpes_DNAp_acc 199.2 1.60e-58 100.0% 34.5%