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ORF5

Euk-Vir

Tobacco_virus_2

ORF5__YP_009352892__Tobacco_virus_2__1972995

Identity

Accession:: YP_009352892 ↗
Protein ID:: ORF5
Kingdom:: euk

Quality

69.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Tobacco_virus_2

TaxID: 1972995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55_70-112_152-185

PDB

Domain cluster: rep: readthrough_protein__YP_001931932__Tobacco_vein_distorting_virus__192203__D257-298_326-349_384-436_452-463

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01690.22 best	PLRV_ORF5	153.3	1.40e-44	75.0%	21.4%
PF01690.22	PLRV_ORF5	60.3	2.20e-16	27.3%	6.7%

D2 medium residues 56-69_113-151_186-217

PDB

Domain cluster: rep: CP-readthrough_protein__YP_667840__Chickpea_chlorotic_stunt_virus__328430__D299-331_357-390_423-435

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01690.22 best	PLRV_ORF5	71.6	8.20e-20	48.2%	7.2%
PF01690.22	PLRV_ORF5	38.0	1.20e-09	38.8%	6.9%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4f3jA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	42.0	3.57e-01	76.5%	65.7%
1tnrA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	41.0	3.44e-01	72.9%	72.9%
3isrA02	2.60.40.2250	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.58	39.0	3.75e-01	70.6%	100.0%
4ht1T00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.57	41.0	3.51e-01	74.1%	66.4%
2wq4A01	2.60.120.760	Mainly Beta › Sandwich › Jelly Rolls ›	0.57	41.0	3.56e-01	75.3%	79.1%
6f2sH01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.57	39.0	2.99e-01	72.9%	73.5%
5h4cB00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	40.0	3.45e-01	75.3%	65.2%
1o91A00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	39.0	3.42e-01	74.1%	68.7%
5hbaA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	39.0	3.36e-01	75.3%	68.4%
4msvA01	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	36.0	3.10e-01	70.6%	78.8%
2vo8A00	2.60.40.680	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	31.0	2.73e-01	94.1%	37.0%
2xvlA02	2.60.120.380	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	35.0	2.89e-01	70.6%	48.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3573400	10.3.1.2 ↗	beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q	0.56	40.0	3.36e-01	75.3%	64.3%
3496483	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.56	38.0	3.59e-01	71.8%	98.1%
3768503	10.3.1.2 ↗	beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q	0.55	40.0	3.34e-01	76.5%	63.4%
3883934	10.3.1.2 ↗	beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q	0.53	38.0	3.06e-01	75.3%	52.4%
3946137	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.53	31.0	3.25e-01	74.1%	62.5%
3879619	10.3.1.2 ↗	beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q	0.53	38.0	3.18e-01	75.3%	60.0%
4955989	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	36.0	3.48e-01	72.9%	83.2%
5039150	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	37.0	3.32e-01	75.3%	73.0%
3246388	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.51	32.0	2.90e-01	76.5%	46.2%
3614460	10.15.1.1 ↗	beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935	0.51	39.0	3.45e-01	81.2%	71.7%
4456175	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.51	37.0	2.78e-01	77.6%	36.8%
3492248	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.50	37.0	3.56e-01	76.5%	76.8%
339577	10.6.1.1 ↗	beta sandwiches › jelly-roll › Calcium-mediated lectin › Calcium-mediated lectin › PA-IIL	0.50	36.0	3.15e-01	75.3%	90.6%
3706845	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	30.0	2.72e-01	94.1%	39.2%

D3 medium residues 314-367

PDB

Domain cluster: rep: putative_read_through_protein_P5__YP_004207918__Pepper_vein_yellows_virus__909827__D577-627

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01690.22 best	PLRV_ORF5	100.3	1.60e-28	100.0%	10.3%