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ORF5b

Euk-Vir

Canada_goose_coronavirus

ORF5b__YP_009755902__Canada_goose_coronavirus__2569586

Identity

Accession:
YP_009755902 ↗
Protein ID:
ORF5b
Kingdom:
euk

Quality

78.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Gammacoronavirus› Canada_goose_coronavirus

TaxID: 2569586

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-80
PDB
Domain cluster: rep: NS6_protein__YP_005352884__Common_moorhen_coronavirus_HKU21__1159902__D23-81
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z6bA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 39.0 2.84e-01 71.4% 21.6%
2uvgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 40.0 2.87e-01 71.4% 22.6%
1x3bA00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.58 44.0 3.35e-01 81.0% 54.1%
7kdyB01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.58 48.0 3.62e-01 92.1% 50.7%
1ir6A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 47.0 3.82e-01 93.7% 59.7%
4xfkA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 3.28e-01 95.2% 97.7%
4joqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 43.0 3.35e-01 84.1% 66.7%
1ccwB01 3.20.20.240 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase 0.56 47.0 2.92e-01 100.0% 79.1%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 41.0 3.80e-01 100.0% 61.2%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.55 47.0 3.65e-01 100.0% 60.6%
1tvmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 35.0 3.10e-01 71.4% 43.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.75e-01 90.5% 54.8%
1efaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 38.0 3.08e-01 74.6% 61.1%
2xtkA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 44.0 2.87e-01 95.2% 99.4%
3ksmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 3.52e-01 92.1% 74.6%
3hutA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 2.93e-01 84.1% 53.1%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 2.93e-01 79.4% 37.7%
1vwxO01 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.53 43.0 3.32e-01 90.5% 54.4%
7asgA01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.53 39.0 3.12e-01 81.0% 59.4%
2vy9A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.53 41.0 3.43e-01 85.7% 69.3%
4c5cA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 34.0 3.11e-01 74.6% 50.0%
1dbqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 36.0 2.85e-01 71.4% 55.2%
4aq4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 39.0 2.84e-01 82.5% 63.9%
3nl6B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 44.0 3.10e-01 100.0% 46.6%
3b6hA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 42.0 2.59e-01 95.2% 94.5%
3c4nA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 44.0 3.55e-01 95.2% 96.8%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 41.0 2.92e-01 93.7% 90.0%
3myuA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.50 42.0 3.23e-01 95.2% 86.6%
1ng4A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.50 43.0 3.38e-01 98.4% 92.9%
2q4aA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.50 42.0 2.75e-01 100.0% 22.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3695126 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 58.0 3.47e-01 93.7% 14.7%
4214410 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.68 40.0 3.79e-01 82.5% 49.3%
3311258 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.62 52.0 4.01e-01 98.4% 53.8%
4664199 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.60 43.0 3.09e-01 76.2% 55.1%
3171094 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 47.0 3.03e-01 100.0% 17.5%
4259867 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.59 47.0 3.37e-01 93.7% 72.6%
3507026 2498.2.1.1 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_20b 0.58 39.0 2.99e-01 71.4% 28.1%
3601334 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 38.0 2.83e-01 93.7% 25.7%
3281192 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 42.0 3.04e-01 79.4% 56.2%
3281971 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 45.0 2.98e-01 87.3% 67.7%
3785670 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 47.0 3.02e-01 95.2% 20.6%
3590296 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.57 39.0 2.96e-01 71.4% 52.7%
4936990 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.56 44.0 3.75e-01 93.7% 77.1%
5058147 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.55 41.0 3.57e-01 82.5% 63.8%
4013234 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 48.0 2.86e-01 100.0% 16.6%
3498759 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 44.0 3.10e-01 93.7% 40.0%
4013630 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 45.0 3.38e-01 95.2% 35.3%
3568843 2006.1.6.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.54 43.0 3.17e-01 88.9% 81.7%
3277433 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.53 35.0 2.96e-01 71.4% 38.3%
1945553 2498.1.1.41 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60 0.52 43.0 2.82e-01 98.4% 19.3%
3468641 109.4.1.2213 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29032 0.52 44.0 3.09e-01 100.0% 43.0%
4027911 2485.1.1.90 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C 0.52 36.0 2.91e-01 71.4% 43.2%
3518732 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.52 35.0 2.79e-01 71.4% 32.6%
3492857 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.52 34.0 2.73e-01 71.4% 31.4%
3835475 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.51 34.0 2.84e-01 71.4% 36.7%
4179809 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 37.0 2.95e-01 87.3% 34.0%
4011847 2007.1.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › ThuA 0.50 39.0 2.72e-01 85.7% 57.4%
3789331 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 41.0 2.63e-01 92.1% 21.6%