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ORF62
Euk-VirCallitrichine_gammaherpesvirus_3
ORF62__NP_733916__Callitrichine_gammaherpesvirus_3__106331
Identity
- Accession:
- NP_733916 ↗
- Protein ID:
- ORF62
- Kingdom:
- euk
Quality
84.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
callitrichine_gammaherpesvirus_3
TaxID: 106331
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-150
Domain cluster:
rep: DNA_cleavage_packaging_protein__YP_009207093__Hawaiian_green_turtle_herpesvirus__70564__D1-103_380-397
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01673.24 best | Herpes_env | 65.9 | 4.90e-18 | 80.6% | 17.0% |
D2
medium
residues 151-189_441-479
Domain cluster:
rep: ORF68__YP_001129426__Human_gammaherpesvirus_8__37296__D145-178_413-467
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exjA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 61.0 | 5.32e-01 | 100.0% | 97.5% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.77e-01 | 80.8% | 89.8% |
| 4g10A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 58.0 | 4.84e-01 | 96.2% | 76.5% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 48.0 | 4.00e-01 | 76.9% | 58.7% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 56.0 | 4.81e-01 | 100.0% | 82.7% |
| 2xsbA02 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.65 | 46.0 | 3.73e-01 | 74.4% | 72.5% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.62 | 45.0 | 4.09e-01 | 76.9% | 94.5% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.62 | 50.0 | 4.14e-01 | 92.3% | 55.2% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.62 | 44.0 | 3.83e-01 | 75.6% | 71.2% |
| 1s70B02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.62 | 53.0 | 4.58e-01 | 98.7% | 87.6% |
| 1anxA04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.61 | 49.0 | 5.14e-01 | 89.7% | 100.0% |
| 4ryaA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 46.0 | 3.50e-01 | 84.6% | 82.6% |
| 4y6cA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 53.0 | 3.86e-01 | 97.4% | 37.3% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 44.0 | 3.95e-01 | 84.6% | 74.1% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.56 | 38.0 | 3.81e-01 | 70.5% | 95.1% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.62e-01 | 92.3% | 45.0% |
| 2vgxB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 48.0 | 3.98e-01 | 98.7% | 71.7% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 41.0 | 3.89e-01 | 79.5% | 91.3% |
| 1rrzA00 | 1.20.970.20 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Glycogen synthesis protein GlgS | 0.55 | 37.0 | 3.95e-01 | 74.4% | 81.8% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 36.0 | 3.69e-01 | 70.5% | 97.3% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.97e-01 | 87.2% | 76.7% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 45.0 | 3.34e-01 | 100.0% | 51.1% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.50e-01 | 98.7% | 58.4% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.52 | 37.0 | 2.95e-01 | 79.5% | 37.4% |
| 2kckA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.98e-01 | 100.0% | 96.4% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.52 | 44.0 | 4.39e-01 | 100.0% | 98.8% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.19e-01 | 79.5% | 76.6% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.50 | 38.0 | 3.64e-01 | 93.6% | 69.7% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.50 | 42.0 | 3.96e-01 | 97.4% | 77.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3713780 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 54.0 | 4.61e-01 | 75.6% | 71.2% |
| 3901327 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.75 | 52.0 | 4.54e-01 | 71.8% | 73.9% |
| 3274773 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 49.0 | 3.49e-01 | 71.8% | 35.1% |
| 4978688 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.67 | 49.0 | 4.66e-01 | 78.2% | 93.7% |
| 5072045 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.67 | 54.0 | 4.97e-01 | 89.7% | 88.6% |
| 3932693 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.66 | 47.0 | 4.59e-01 | 74.4% | 96.5% |
| 3770783 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 48.0 | 4.43e-01 | 79.5% | 86.0% |
| 3461370 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.62 | 45.0 | 4.47e-01 | 79.5% | 96.5% |
| 3628093 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.61 | 44.0 | 4.05e-01 | 76.9% | 82.9% |
| 3807085 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.61 | 45.0 | 4.45e-01 | 80.8% | 96.5% |
| 3625675 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 50.0 | 4.41e-01 | 98.7% | 84.0% |
| 4387552 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 44.0 | 4.29e-01 | 80.8% | 100.0% |
| 3999246 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 41.0 | 3.80e-01 | 75.6% | 91.4% |
| 3203104 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 3.64e-01 | 98.7% | 38.2% |
| 3310956 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.57 | 44.0 | 3.54e-01 | 82.1% | 88.6% |
| 3222726 | 109.4.1.1816 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KANSL3_1st | 0.57 | 48.0 | 3.88e-01 | 100.0% | 71.2% |
| 5048681 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.57 | 49.0 | 4.27e-01 | 100.0% | 80.8% |
| 3832023 | 192.29.1.34 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF677 | 0.56 | 40.0 | 3.92e-01 | 73.1% | 91.8% |
| 3228866 | 101.6.1.0 ↗ | alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C | 0.55 | 39.0 | 3.96e-01 | 74.4% | 98.8% |
| 3498285 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 38.0 | 3.29e-01 | 78.2% | 57.9% |
| 3274002 | 3676.1.1.1 ↗ | alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › DUF4217 | 0.52 | 33.0 | 3.07e-01 | 91.0% | 52.6% |
| 3901696 | 192.8.1.240 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › HR1 | 0.52 | 39.0 | 3.83e-01 | 82.1% | 97.6% |
| 1007309 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.52 | 44.0 | 3.55e-01 | 98.7% | 86.6% |
D3
medium
residues 255-347
Domain cluster:
representative