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ORF62
Euk-VirFelis_catus_gammaherpesvirus_1
ORF62__YP_009173942__Felis_catus_gammaherpesvirus_1__1452540
Identity
- Accession:
- YP_009173942 ↗
- Protein ID:
- ORF62
- Kingdom:
- euk
Quality
78.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Felid_gammaherpesvirus_1
TaxID: 1452540
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-185
Domain cluster:
rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 103.4 | 2.20e-29 | 100.0% | 43.4% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.70 | 30.0 | 3.71e-01 | 97.5% | 62.7% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 34.0 | 3.47e-01 | 97.5% | 52.5% |
| 4feuF01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 27.0 | 3.39e-01 | 96.7% | 71.2% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 32.0 | 3.59e-01 | 77.5% | 73.0% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 39.0 | 3.68e-01 | 98.3% | 57.7% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 42.0 | 3.86e-01 | 99.2% | 61.6% |
| 2weiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 26.0 | 3.03e-01 | 96.7% | 62.2% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 40.0 | 3.52e-01 | 99.2% | 52.5% |
| 5choF00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.72e-01 | 99.2% | 61.9% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.50e-01 | 99.2% | 53.9% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.04e-01 | 99.2% | 66.3% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 36.0 | 3.80e-01 | 98.3% | 78.4% |
| 3uc4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 24.0 | 2.87e-01 | 96.7% | 62.4% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 38.0 | 3.55e-01 | 99.2% | 60.3% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 39.0 | 3.37e-01 | 98.3% | 52.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483841 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.73 | 33.0 | 3.53e-01 | 97.5% | 48.5% |
| 5038467 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 31.0 | 3.80e-01 | 98.3% | 62.0% |
| 5041953 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 30.0 | 4.14e-01 | 95.0% | 78.3% |
| 4933363 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.71 | 30.0 | 3.78e-01 | 97.5% | 63.5% |
| 5012955 | 1.1.7.128 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 | 0.70 | 38.0 | 4.50e-01 | 99.2% | 76.5% |
| 4259810 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.70 | 31.0 | 3.68e-01 | 98.3% | 60.0% |
| 77 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.69 | 36.0 | 3.80e-01 | 97.5% | 54.5% |
| 4945432 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 30.0 | 3.50e-01 | 97.5% | 56.5% |
| 4964309 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 30.0 | 3.77e-01 | 97.5% | 66.2% |
| 5017568 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 31.0 | 3.69e-01 | 97.5% | 62.5% |
| 4942485 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.67 | 33.0 | 3.93e-01 | 98.3% | 68.8% |
| 5002426 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.67 | 32.0 | 3.81e-01 | 99.2% | 64.7% |
| 5077063 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.67 | 30.0 | 3.65e-01 | 98.3% | 64.0% |
| 5024522 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 36.0 | 3.21e-01 | 99.2% | 41.8% |
| 4957565 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 36.0 | 3.63e-01 | 95.8% | 61.6% |
| 3611250 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 45.0 | 4.27e-01 | 98.3% | 70.3% |
| 3408609 | 231.1.1.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 | 0.51 | 42.0 | 2.73e-01 | 90.8% | 98.3% |
| 3601766 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.51 | 37.0 | 3.83e-01 | 98.3% | 80.0% |
D2
high
residues 199-333
Domain cluster:
rep: capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247__D166-291
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 101.1 | 1.10e-28 | 100.0% | 49.8% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.72 | 37.0 | 4.95e-01 | 83.7% | 97.0% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 37.0 | 4.26e-01 | 83.7% | 69.3% |
| 5jtwA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 35.0 | 4.01e-01 | 82.2% | 63.7% |
| 3v6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 32.0 | 3.96e-01 | 80.7% | 69.0% |
| 6brbD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 32.0 | 3.90e-01 | 80.7% | 67.8% |
| 1owwA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 33.0 | 3.94e-01 | 82.2% | 67.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 36.0 | 4.58e-01 | 74.1% | 93.4% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 33.0 | 3.93e-01 | 81.5% | 71.6% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 35.0 | 4.57e-01 | 79.3% | 98.6% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 32.0 | 3.84e-01 | 80.7% | 71.3% |
| 3b83C00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 32.0 | 3.67e-01 | 82.2% | 62.6% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 32.0 | 3.60e-01 | 81.5% | 62.0% |
| 1cfbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 32.0 | 3.60e-01 | 84.4% | 67.0% |
| 6x3aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 33.0 | 3.67e-01 | 80.7% | 70.2% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.58 | 34.0 | 3.61e-01 | 81.5% | 64.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 30.0 | 3.75e-01 | 75.6% | 83.5% |
| 4oo1I01 | 2.40.50.880 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 24.0 | 3.11e-01 | 95.6% | 66.7% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.56 | 35.0 | 3.79e-01 | 87.4% | 73.9% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 36.0 | 3.66e-01 | 86.7% | 64.9% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 27.0 | 2.82e-01 | 80.0% | 46.3% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.55 | 34.0 | 3.39e-01 | 81.5% | 58.0% |
| 1ywhA01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 32.0 | 3.88e-01 | 98.5% | 96.3% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.52 | 37.0 | 3.44e-01 | 83.0% | 57.0% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 31.0 | 3.47e-01 | 87.4% | 78.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023972 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 30.0 | 3.80e-01 | 75.6% | 61.2% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 35.0 | 4.89e-01 | 76.3% | 98.4% |
| 3933347 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 37.0 | 4.32e-01 | 82.2% | 71.6% |
| 5045949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 37.0 | 4.16e-01 | 82.2% | 65.7% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 33.0 | 4.60e-01 | 75.6% | 96.9% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.66 | 42.0 | 4.51e-01 | 95.6% | 73.9% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 36.0 | 4.59e-01 | 74.1% | 94.7% |
| 4873170 | 11.1.1.253 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LIFR_D2 | 0.65 | 38.0 | 4.06e-01 | 83.0% | 66.4% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 36.0 | 4.40e-01 | 74.1% | 86.7% |
| 1442393 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 36.0 | 3.94e-01 | 72.6% | 66.1% |
| 3394311 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.64 | 41.0 | 4.48e-01 | 95.6% | 78.2% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 35.0 | 4.47e-01 | 80.0% | 96.0% |
| 3280008 | 3115.1.1.2 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 | 0.61 | 40.0 | 4.80e-01 | 78.5% | 98.9% |
| 3179842 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.60 | 37.0 | 3.89e-01 | 84.4% | 68.3% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 34.0 | 3.81e-01 | 74.1% | 70.4% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 34.0 | 4.33e-01 | 74.1% | 100.0% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 35.0 | 3.87e-01 | 74.1% | 73.3% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.59 | 35.0 | 4.31e-01 | 75.6% | 92.9% |
| 3396683 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 34.0 | 4.31e-01 | 95.6% | 97.5% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 35.0 | 4.26e-01 | 74.8% | 92.9% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.58 | 33.0 | 3.79e-01 | 75.6% | 74.3% |
| 3331651 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.57 | 40.0 | 3.96e-01 | 83.7% | 68.6% |
| 3490255 | 11.1.4.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 | 0.57 | 33.0 | 3.73e-01 | 87.4% | 76.0% |
| 4199730 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 39.0 | 4.26e-01 | 97.0% | 89.5% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 34.0 | 3.39e-01 | 95.6% | 59.3% |
| 3413240 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.54 | 46.0 | 4.35e-01 | 91.9% | 98.8% |
| 3260499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.96e-01 | 88.1% | 80.8% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.53 | 36.0 | 4.04e-01 | 93.3% | 89.5% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 43.0 | 3.21e-01 | 88.9% | 52.1% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.52 | 33.0 | 3.07e-01 | 82.2% | 49.1% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.51 | 42.0 | 2.77e-01 | 88.9% | 30.9% |
| 3220022 | 382.1.1.27 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7773 | 0.51 | 36.0 | 3.83e-01 | 97.8% | 83.1% |
| 3350520 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.51 | 42.0 | 3.04e-01 | 88.9% | 45.4% |
| 3885857 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 27.0 | 3.50e-01 | 80.7% | 93.3% |