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ORF62

Euk-Vir

Ovine_gammaherpesvirus_2

ORF62__YP_438186__Ovine_gammaherpesvirus_2__10398

Identity

Accession:: YP_438186 ↗
Protein ID:: ORF62
Kingdom:: euk

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Ovine_gammaherpesvirus_2

TaxID: 10398

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-188

PDB

Domain cluster: rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	89.5	3.70e-25	100.0%	41.4%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ey4D00	2.40.10.230	Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain	0.71	31.0	3.76e-01	99.1%	61.3%
2rdeA02	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.68	36.0	3.75e-01	99.1%	53.2%
2eqnA01	2.40.10.230	Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain	0.68	32.0	3.60e-01	99.1%	56.3%
4p02A03	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.62	34.0	3.40e-01	99.1%	51.6%
1x5lA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.60	30.0	3.38e-01	83.6%	61.4%
2ecuA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.55	39.0	3.63e-01	99.1%	56.4%
2qckA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.54	40.0	3.71e-01	99.1%	59.6%
2weiA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.54	27.0	3.04e-01	98.3%	61.1%
1ylnA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.53	30.0	3.09e-01	99.1%	55.3%
4xhyA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.53	39.0	3.53e-01	98.3%	55.9%
3pftA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.52	39.0	3.58e-01	99.1%	59.0%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5074238	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.73	31.0	3.82e-01	99.1%	61.3%
5041953	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.73	32.0	4.27e-01	97.4%	78.3%
4259810	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.71	31.0	3.72e-01	100.0%	58.7%
5077063	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.70	30.0	3.70e-01	99.1%	61.3%
4942485	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.70	34.0	3.99e-01	99.1%	66.3%
4964309	1.1.7.20 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1	0.69	31.0	3.81e-01	99.1%	64.9%
5024522	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.60	36.0	3.21e-01	100.0%	41.2%
4957565	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.57	37.0	3.62e-01	96.6%	60.0%
5030770	821.1.1.0 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease	0.57	32.0	3.44e-01	81.0%	65.3%
3407383	1.1.17.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin	0.51	35.0	2.71e-01	97.4%	32.0%

D2 high residues 200-333

PDB

Domain cluster: rep: capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247__D166-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	111.8	5.90e-32	100.0%	50.9%