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ORF63

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

ORF63__YP_010084620__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:: YP_010084620 ↗
Protein ID:: ORF63
Kingdom:: euk

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-187

PDB

Domain cluster: rep: tegument_protein__YP_010087505__Phascolarctid_gammaherpesvirus_1__2249313__D1-176

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	91.4	5.60e-26	100.0%	18.3%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t5oA01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.63	41.0	4.44e-01	85.8%	77.3%
2vsoF01	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	48.0	4.28e-01	81.1%	66.7%
4qhpA05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.58	52.0	4.24e-01	100.0%	92.7%
3b34A05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.57	52.0	4.23e-01	100.0%	80.9%
4wqoD00	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.55	42.0	4.54e-01	91.1%	95.7%
3d85C00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	35.0	3.92e-01	80.5%	82.0%
1bgcA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	39.0	4.07e-01	87.6%	79.1%
7drjB01	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.54	38.0	3.79e-01	73.4%	74.3%
4mhlA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	41.0	4.19e-01	89.9%	81.4%
1yfmA02	1.20.200.10	Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain)	0.53	39.0	3.36e-01	75.7%	81.8%
2w53B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	35.0	3.54e-01	98.2%	64.7%
6dewA01	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	41.0	3.97e-01	89.9%	74.2%
2clbA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.50	36.0	3.73e-01	72.8%	100.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1283715	3852.1.1.1 ↗	alpha superhelices › UL37 N-terminal half › UL37 N-terminal half › UL37 N-terminal half › Herpes_UL37_1	0.76	72.0	5.05e-01	100.0%	39.0%
3681226	3336.1.1.1 ↗	alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE	0.62	47.0	3.80e-01	79.3%	97.8%
5030208	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.60	50.0	3.43e-01	89.9%	88.6%
3403421	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	40.0	4.21e-01	77.5%	77.0%
3206884	109.10.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin	0.58	42.0	3.78e-01	73.4%	88.1%
3263198	5000.4.1.0 ↗	alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain	0.58	41.0	3.50e-01	72.2%	71.1%
3709939	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	48.0	4.01e-01	89.9%	75.4%
3203655	601.16.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase	0.55	38.0	4.13e-01	84.6%	85.0%
3726914	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.54	38.0	4.07e-01	84.6%	82.8%
5039837	5069.1.1.15 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm	0.53	38.0	3.61e-01	71.0%	70.0%
3213965	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	46.0	3.72e-01	95.3%	47.5%
4175679	604.9.1.27 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Zw10_N, Zw10_middle	0.52	31.0	3.34e-01	71.6%	66.9%
3232748	109.4.1.1709 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7758	0.52	41.0	3.83e-01	84.0%	91.9%
3834395	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	40.0	2.89e-01	84.6%	57.2%
4975372	3960.1.1.0 ↗	alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain	0.50	31.0	3.58e-01	71.0%	84.2%
3610581	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.50	35.0	3.87e-01	88.8%	88.9%
5040638	1075.5.1.8 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3	0.50	36.0	3.17e-01	74.0%	86.8%

D2 high residues 500-646

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D499-654

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	159.4	1.60e-46	99.3%	14.8%

D3 high residues 649-845_861-874

PDB

Domain cluster: rep: ORF63__YP_010084430__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D640-805

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	140.7	7.40e-41	99.5%	22.6%

D4 medium residues 207-319

PDB

Domain cluster: rep: orf63__YP_009044446__Alcelaphine_gammaherpesvirus_2__138184__D216-316

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	107.2	9.20e-31	100.0%	13.2%

D5 medium residues 320-465

PDB

Domain cluster: rep: JM123__YP_238426__Macaca_fuscata_rhadinovirus__272551__D339-466

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04523.19 best	Herpes_U30	135.9	2.00e-39	100.0%	16.9%