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ORF65

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

ORF65__YP_010084622__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:
YP_010084622 ↗
Protein ID:
ORF65
Kingdom:
euk

Quality

61.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-66
PDB
Domain cluster: rep: ORF59__NP_733913__Callitrichine_gammaherpesvirus_3__106331__D15-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06112.17 best Herpes_capsid 65.7 8.00e-18 100.0% 29.6%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.78 61.0 4.90e-01 86.8% 53.8%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.74 58.0 4.88e-01 83.0% 64.7%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.74 57.0 4.02e-01 84.9% 29.3%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.70 50.0 4.63e-01 75.5% 75.8%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 4.64e-01 84.9% 72.0%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 49.0 3.58e-01 81.1% 29.1%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 52.0 3.13e-01 86.8% 84.5%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 48.0 4.29e-01 81.1% 59.7%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 45.0 2.96e-01 75.5% 27.7%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 48.0 4.19e-01 83.0% 60.3%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.62 49.0 4.15e-01 90.6% 52.9%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.59 50.0 3.52e-01 96.2% 85.9%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.57 49.0 4.57e-01 94.3% 92.4%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.56 38.0 3.64e-01 73.6% 92.5%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.56 45.0 3.68e-01 100.0% 63.2%
2x0kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 2.76e-01 77.4% 25.3%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 2.91e-01 84.9% 69.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2537128 3942.1.1.1 ↗ alpha bundles › Smallest capsid protein (SCP) › Smallest capsid protein (SCP) › Smallest capsid protein (SCP) › Herpes_capsid 0.91 71.0 7.64e-01 83.0% 100.0%
5043620 3352.1.1.1 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.79 67.0 3.88e-01 92.5% 20.0%
4594465 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.79 65.0 5.34e-01 90.6% 55.8%
4951660 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.74 59.0 4.99e-01 88.7% 61.1%
3244185 381.1.1.1 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR 0.72 64.0 4.68e-01 100.0% 81.4%
3676043 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.71 60.0 3.73e-01 92.5% 91.2%
3468013 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 52.0 4.26e-01 81.1% 44.0%
3728232 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.69 63.0 4.21e-01 100.0% 60.0%
3725517 148.1.1.9 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID_20kDa 0.69 60.0 5.20e-01 96.2% 70.0%
4995838 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.69 53.0 3.44e-01 83.0% 34.7%
56801 150.6.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › SO2669-like › SO2669-like 0.69 51.0 4.84e-01 79.2% 71.9%
3287376 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.68 51.0 3.52e-01 83.0% 24.6%
5009681 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.65 57.0 4.21e-01 100.0% 75.0%
3503355 3730.1.1.0 ↗ alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain 0.60 43.0 4.31e-01 75.5% 72.7%