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ORF66-like_protein

Euk-Vir

Bufonid_herpesvirus_1

ORF66-like_protein__YP_009552930__Bufonid_herpesvirus_1__2282206

Identity

Accession:
YP_009552930 ↗
Protein ID:
ORF66-like_protein
Kingdom:
euk

Quality

65.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Bufonid_herpesvirus_1

TaxID: 2282206

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-101
PDB
D2 medium residues 117-183
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.59 48.0 3.47e-01 94.0% 76.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954349 2006.1.2.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.53 44.0 3.12e-01 100.0% 90.8%
5000123 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.52 39.0 3.11e-01 82.1% 91.1%
D3 medium residues 189-242
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.67 46.0 3.91e-01 72.2% 98.9%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 41.0 3.72e-01 70.4% 68.5%
3ayhA00 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.59 42.0 3.21e-01 77.8% 37.3%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 3.61e-01 75.9% 93.7%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 43.0 3.17e-01 100.0% 30.3%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 38.0 3.66e-01 77.8% 67.6%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.55 43.0 3.45e-01 94.4% 90.6%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 36.0 3.41e-01 70.4% 53.5%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.83e-01 96.3% 31.2%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 4.03e-01 96.3% 94.4%
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.52 43.0 2.83e-01 96.3% 72.8%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.52 39.0 3.23e-01 87.0% 75.4%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 41.0 3.60e-01 100.0% 76.6%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 39.0 3.48e-01 88.9% 84.1%
5ailA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.50 41.0 2.98e-01 100.0% 60.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042816 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.63 50.0 4.47e-01 96.3% 69.4%
3946761 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.60 48.0 4.29e-01 100.0% 77.8%
3345858 108.1.1.11 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › Cullin_binding 0.57 44.0 3.69e-01 88.9% 85.7%
2813240 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.56 38.0 3.51e-01 72.2% 52.8%
4012820 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 39.0 2.80e-01 74.1% 69.7%
3779769 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.56 45.0 2.96e-01 96.3% 61.8%
4985999 4994.1.1.0 ↗ alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like 0.55 44.0 4.01e-01 94.4% 95.0%
3629014 101.1.1.250 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 0.55 39.0 3.86e-01 77.8% 71.7%
3660456 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 44.0 3.61e-01 94.4% 71.0%
3343651 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.52 42.0 3.09e-01 100.0% 93.0%
3621263 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.51 41.0 3.75e-01 90.7% 74.7%
3360652 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.51 40.0 3.38e-01 85.2% 82.1%
D4 medium residues 246-344
PDB
Domain cluster: rep: ORF24__YP_656679__Ranid_herpesvirus_1__85655__D281-378
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vj4A01 1.10.10.2060 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 40.0 4.17e-01 76.8% 92.2%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 4.20e-01 82.8% 94.8%
1irjA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 37.0 3.91e-01 79.8% 82.4%
2m45A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.77e-01 77.8% 79.3%
5cl3A00 1.25.10.90 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › 0.52 39.0 3.02e-01 81.8% 34.6%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.30e-01 74.7% 96.5%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 4.01e-01 81.8% 97.4%
2l5yA01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.51 31.0 3.44e-01 77.8% 77.3%
1rsgA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.51 41.0 3.18e-01 90.9% 36.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470489 108.1.1.19 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_3 0.54 36.0 3.72e-01 79.8% 70.5%
4024244 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.54 38.0 3.07e-01 84.8% 37.8%
3566286 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.54 42.0 3.16e-01 85.9% 74.7%
3445365 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 35.0 3.79e-01 87.9% 77.6%
3501315 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.53 41.0 4.11e-01 100.0% 82.0%
3254554 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.53 34.0 3.68e-01 79.8% 78.8%
3652256 7088.1.1.2 ↗ alpha arrays › GPI-anchored protein › GPI-anchored protein › GPI-anchored protein › LLG1 0.52 41.0 3.98e-01 85.9% 96.5%
3671957 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.52 34.0 3.53e-01 89.9% 72.2%
3340253 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 33.0 3.54e-01 90.9% 76.5%
3521127 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.51 37.0 3.12e-01 77.8% 70.3%
3504090 108.1.1.39 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.51 33.0 3.55e-01 92.9% 77.6%