ORF66

Euk-Vir

Retroperitoneal_fibromatosis-associated_herpesvirus

ORF66__YP_010084433__Retroperitoneal_fibromatosis-associated_herpesvirus__111469

Identity

69.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Retroperitoneal_fibromatosis-associated_herpesvirus

TaxID: 111469

View cluster (9 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-143

PDB

Domain cluster: rep: hypothetical_protein_RHVP.66__YP_004207902__Cricetid_gammaherpesvirus_2__1605972__D5-122

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jx0A00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.58	31.0	3.31e-01	74.1%	57.3%
3rlbA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.56	41.0	3.82e-01	74.8%	93.2%
4hzuS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.56	40.0	3.86e-01	74.1%	90.9%
1gnlA01	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	33.0	3.35e-01	87.4%	59.7%
7drjB01	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.52	41.0	3.77e-01	81.8%	88.5%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	28.0	3.58e-01	88.8%	88.2%
4q2cA01	1.10.3210.30	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 ›	0.52	38.0	3.10e-01	74.8%	88.2%
1r2jA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	28.0	3.25e-01	74.1%	72.8%
1keaA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.50	33.0	3.57e-01	76.9%	81.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3987951	604.39.1.16 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThiW	0.53	38.0	3.71e-01	74.8%	95.0%
3505334	5081.1.1.4 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751	0.52	38.0	3.43e-01	75.5%	68.3%
3296913	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.52	32.0	3.15e-01	80.4%	55.0%
3260577	604.39.1.12 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom	0.51	37.0	3.24e-01	74.8%	89.5%

D2 high residues 261-426

PDB

Domain cluster: rep: cysteine-rich_protein__YP_009179304__Elephant_endotheliotropic_herpesvirus_4__548914__D310-358_371-477

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03117.21 best	Herpes_UL49_1	217.2	3.00e-64	100.0%	71.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fb9B00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.54	22.0	3.02e-01	92.8%	72.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4451587	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	30.0	3.52e-01	89.2%	84.5%

D3 medium residues 156-167_211-258

PDB