←Back to structures

ORF72

Euk-Vir

Ranid_herpesvirus_2

ORF72__YP_656580__Ranid_herpesvirus_2__389214

Identity

Accession:: YP_656580 ↗
Protein ID:: ORF72
Kingdom:: euk

Quality

42.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_2

TaxID: 389214

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-148

PDB

D2 medium residues 149-210

PDB

D3 medium residues 211-440

PDB

D4 medium residues 491-551

PDB

D5 medium residues 595-664_945-962_1032-1076

PDB

D6 medium residues 665-729_754-801_887-944

PDB

D7 medium residues 802-886

PDB

D8 medium residues 963-1031

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17072.11 best	Spike_torovirin	106.1	2.20e-30	100.0%	5.4%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2a6hC05	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.59	40.0	3.95e-01	98.6%	65.3%
2hdlA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.56	32.0	3.09e-01	85.5%	48.1%
2felA00	1.20.200.10	Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain)	0.54	43.0	2.77e-01	87.0%	25.8%
3zpmA00	3.15.10.10	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1	0.52	39.0	2.85e-01	82.6%	83.4%
1f44A01	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.51	36.0	2.67e-01	75.4%	94.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4943173	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.67	29.0	3.51e-01	72.5%	57.8%
4249943	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.66	30.0	3.68e-01	76.8%	64.4%
4056113	1.1.7.80 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C	0.62	33.0	2.95e-01	78.3%	36.0%
4175039	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.59	33.0	3.61e-01	82.6%	67.3%
4206331	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.56	38.0	3.75e-01	97.1%	66.7%
4184523	1.1.7.80 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C	0.55	33.0	2.93e-01	78.3%	41.0%
3245228	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	40.0	2.60e-01	78.3%	18.8%
3281907	109.2.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid	0.52	41.0	2.47e-01	85.5%	75.3%
4025814	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.52	30.0	3.73e-01	76.8%	100.0%
3388887	4.8.1.2 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow	0.52	27.0	2.76e-01	100.0%	43.1%
4584323	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.51	29.0	3.11e-01	82.6%	61.7%
3939481	247.1.1.1 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B	0.51	37.0	2.67e-01	81.2%	91.4%
4117250	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.50	30.0	3.19e-01	84.1%	69.1%