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ORF85

Euk-Vir

Plodia_interpunctella_granulovirus

ORF85__YP_009330217__Plodia_interpunctella_granulovirus__262175

Identity

Accession:
YP_009330217 ↗
Protein ID:
ORF85
Kingdom:
euk

Quality

82.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Plodia_interpunctella_granulovirus

TaxID: 262175

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-99
PDB
Domain cluster: rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 39.0 4.56e-01 74.5% 76.5%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.71 58.0 5.79e-01 100.0% 86.9%
1d4uA00 3.90.530.10 Alpha Beta › Alpha-Beta Complex › Nucleotide Excision Repair Protein XPA (XPA-MBD); B Chain A › XPA C-terminal domain 0.67 46.0 4.44e-01 78.6% 62.2%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.66 53.0 5.27e-01 85.7% 91.1%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.65 52.0 5.12e-01 86.7% 86.8%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 38.0 3.84e-01 71.4% 57.6%
3l4gB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.58 40.0 4.17e-01 70.4% 95.5%
1jmuB01 3.90.1370.10 Alpha Beta › Alpha-Beta Complex › Protein mu-1, chain B, domain 1 › Protein mu-1, chain B, domain 1 0.56 41.0 3.89e-01 77.6% 95.0%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.54 36.0 3.97e-01 71.4% 85.9%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.54 31.0 3.59e-01 71.4% 84.1%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.53 33.0 3.64e-01 80.6% 77.2%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.66e-01 79.6% 72.2%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.53 34.0 3.60e-01 70.4% 73.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.52e-01 78.6% 71.0%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.73e-01 92.9% 85.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1790169 101.1.9.7 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Baculo_PEP_N 0.83 75.0 7.28e-01 100.0% 88.7%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 42.0 3.84e-01 72.4% 42.3%
4954530 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.72 63.0 5.99e-01 95.9% 98.3%
4183912 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 42.0 4.81e-01 76.5% 78.7%
4334333 101.1.9.1 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.69 40.0 3.57e-01 75.5% 40.0%
4101677 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 41.0 3.70e-01 71.4% 43.0%
3495406 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 61.0 6.03e-01 98.0% 100.0%
4933561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.67 38.0 4.78e-01 75.5% 98.2%
3525074 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.67 53.0 5.53e-01 83.7% 98.9%
3798287 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 54.0 5.48e-01 85.7% 96.8%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.66 53.0 5.25e-01 85.7% 87.6%
5064906 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.66 38.0 4.76e-01 70.4% 100.0%
4674139 101.1.9.30 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.66 45.0 4.08e-01 72.4% 52.3%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.65 37.0 4.65e-01 72.4% 100.0%
3785640 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 58.0 5.52e-01 98.0% 99.1%
4040255 101.1.9.92 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5525 0.64 51.0 4.30e-01 85.7% 93.3%
3203041 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 56.0 5.62e-01 96.9% 96.0%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.64 58.0 5.01e-01 100.0% 90.0%
5064068 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.63 40.0 4.63e-01 91.8% 95.4%
3238512 101.1.9.23 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd 0.62 46.0 4.52e-01 85.7% 70.9%
3782429 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 53.0 5.28e-01 92.9% 95.0%
3180751 101.1.9.90 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd 0.62 36.0 4.39e-01 79.6% 100.0%
3983963 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.62 55.0 5.44e-01 100.0% 99.0%
3947416 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.61 54.0 5.24e-01 98.0% 93.6%
4030271 601.7.1.16 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.61 49.0 4.35e-01 86.7% 83.6%
5053673 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 38.0 4.45e-01 73.5% 96.9%
5073619 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.60 39.0 4.60e-01 70.4% 100.0%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.60 35.0 3.72e-01 85.7% 65.9%
4956741 4271.1.1.0 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.58 37.0 2.96e-01 95.9% 34.1%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 48.0 4.43e-01 90.8% 81.6%
4951928 101.1.9.75 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 0.56 36.0 4.19e-01 92.9% 100.0%
4995042 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.55 38.0 4.07e-01 72.4% 100.0%
3709334 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 39.0 4.02e-01 92.9% 78.9%
3729291 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.54 42.0 4.13e-01 82.7% 78.1%
2671 101.1.2.126 ↗ alpha arrays › HTH › HTH › winged helix domain › IBD 0.54 37.0 3.58e-01 81.6% 61.4%
2320836 4340.1.1.1 ↗ a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.54 30.0 3.51e-01 71.4% 80.3%
5001454 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.53 37.0 4.07e-01 77.6% 96.0%
3597308 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.65e-01 88.8% 80.7%
4646162 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.50 32.0 3.63e-01 82.7% 93.8%
4947239 1.1.7.140 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.50 42.0 4.25e-01 90.8% 95.0%
D2 high residues 113-222
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 31.2 3.90e-07 80.0% 72.9%
D3 high residues 248-351
PDB
Domain cluster: rep: ORF103__YP_009345821__Mythimna_unipuncta_granulovirus_B__2169746__D14-100