←Back to structures
ORF8
Euk-VirRetroperitoneal_fibromatosis-associated_herpesvirus
ORF8__YP_010084368__Retroperitoneal_fibromatosis-associated_herpesvirus__111469
Identity
- Accession:
- YP_010084368 ↗
- Protein ID:
- ORF8
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Retroperitoneal_fibromatosis-associated_herpesvirus
TaxID: 111469
Cluster
View cluster (42 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 528-617
Domain cluster:
rep: envelope_glycoprotein_B__YP_068330__Suid_alphaherpesvirus_1__10345__D109-133_596-685
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00606.24 best | Glycoprotein_B | 111.1 | 7.90e-32 | 100.0% | 41.0% |
D2
medium
residues 71-114_322-418_506-523
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17417.9 best | Glycoprot_B_PH2 | 110.8 | 4.60e-32 | 60.4% | 97.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fvcA03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.93 | 63.0 | 7.73e-01 | 70.4% | 100.0% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 39.0 | 4.65e-01 | 72.3% | 84.3% |
| 4tyzA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 35.0 | 4.18e-01 | 73.0% | 78.0% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 25.0 | 3.33e-01 | 71.7% | 75.6% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.54 | 33.0 | 3.76e-01 | 72.3% | 80.3% |
| 7csoA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 36.0 | 3.98e-01 | 72.3% | 88.2% |
| 1wlfA02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 22.0 | 3.03e-01 | 70.4% | 77.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3618718 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.71 | 42.0 | 4.86e-01 | 71.7% | 80.0% |
| 3925754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.62 | 26.0 | 2.80e-01 | 71.1% | 45.2% |
| 3785371 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 38.0 | 4.12e-01 | 74.2% | 79.3% |
| 3723694 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 39.0 | 4.05e-01 | 73.6% | 76.0% |
| 3892517 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 37.0 | 3.97e-01 | 72.3% | 83.7% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.53 | 28.0 | 3.19e-01 | 71.7% | 66.7% |
| 3596717 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 37.0 | 2.85e-01 | 76.7% | 48.9% |
D3
medium
residues 115-236
Domain cluster:
rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17416.9 best | Glycoprot_B_PH1 | 158.8 | 2.10e-46 | 100.0% | 57.1% |