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ORF8

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

ORF8__YP_010084548__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:: YP_010084548 ↗
Protein ID:: ORF8
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 510-594

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	111.6	5.60e-32	100.0%	38.3%

D2 medium residues 87-99_314-409

PDB

Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17417.9 best	Glycoprot_B_PH2	96.0	1.90e-27	88.1%	93.8%

D3 medium residues 100-229

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	166.6	8.80e-49	100.0%	61.4%

D4 medium residues 230-313

PDB

Domain cluster: rep: Glycoprotein_B__YP_214067__Murid_betaherpesvirus_1__10366__D277-316_330-353

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	61.5	1.30e-16	92.9%	37.6%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7c5yA02	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	39.0	3.17e-01	71.4%	95.4%
1yb3A00	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.54	38.0	3.14e-01	76.2%	80.6%
3atsA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.53	40.0	3.61e-01	79.8%	75.0%
1r9cA00	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.52	37.0	3.28e-01	88.1%	49.6%
2lqkA00	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.51	33.0	3.57e-01	72.6%	80.0%
3o4oC03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.48e-01	78.6%	98.2%
3nvnA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	35.0	2.37e-01	72.6%	89.0%
4fvaC00	3.60.10.10	Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase	0.51	41.0	2.95e-01	89.3%	80.5%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3577526	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.62	34.0	3.68e-01	75.0%	61.4%
5002173	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.60	37.0	3.65e-01	83.3%	57.8%
3388439	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.57	41.0	2.97e-01	78.6%	31.9%
3892200	71.2.1.4 ↗	beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N	0.56	45.0	3.35e-01	90.5%	90.2%
3652009	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.55	44.0	3.81e-01	86.9%	57.7%
3878685	2492.1.1.26 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like	0.52	42.0	3.30e-01	88.1%	95.1%
3280105	211.1.1.6 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3	0.52	40.0	3.32e-01	86.9%	48.2%
3385295	5.1.3.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed	0.52	36.0	2.57e-01	70.2%	33.2%
5030377	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.51	39.0	3.44e-01	84.5%	81.5%
3281007	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.50	39.0	3.30e-01	85.7%	64.7%

D5 medium residues 452-509

PDB

Domain cluster: rep: JM12__YP_238315__Macaca_fuscata_rhadinovirus__272551__D450-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	89.4	3.40e-25	100.0%	25.2%