←Back to structures

ORF_1b_RdRp_viral_polymerase

Euk-Vir

Beet_pseudoyellows_virus

ORF_1b_RdRp_viral_polymerase__NP_940796__Beet_pseudoyellows_virus__72750

Identity

Accession:
NP_940796 ↗
Protein ID:
ORF_1b_RdRp_viral_polymerase
Kingdom:
euk

Quality

87.4 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Beet_pseudoyellows_virus

TaxID: 72750

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-67_84-111_409-505
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase,_partial__YP_001552324__Plum_bark_necrosis_stem_pitting-associated_virus__675077__D23-59_407-502
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 42.2 7.20e-11 52.3% 18.6%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 29.0 3.21e-01 70.0% 56.1%
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 30.0 3.08e-01 93.5% 52.7%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 25.0 3.36e-01 97.1% 84.0%
3qhbA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 33.0 3.29e-01 92.9% 57.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.50 30.0 3.57e-01 92.9% 87.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480768 101.1.1.286 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF27813 0.52 25.0 3.10e-01 94.1% 72.4%
D2 medium residues 112-236_277-351
PDB
Domain cluster: rep: ORF1b__YP_001816770__Bean_yellow_disorder_virus__267970__D132-368
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 86.8 2.10e-24 66.0% 28.4%
PF00978.27 RdRP_2 49.7 3.70e-13 38.0% 17.3%
D3 medium residues 237-276_352-408
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase,_partial__YP_002364303__Grapevine_leafroll-associated_virus_10__367121__D252-284_355-434
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 72.4 5.00e-20 59.8% 12.7%