ORF_1b

Euk-Vir

Strawberry_pallidosis-associated_virus

ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507

Identity

85.5 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Strawberry_pallidosis-associated_virus

TaxID: 227507

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-59_72-92_397-505

PDB

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	74.4	1.20e-20	59.6%	22.5%

D2 medium residues 60-71_93-116_175-212_310-333

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337688__Beihai_tombus-like_virus_7__1922728__D528-588_642-697_774-796

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cqgA02	3.10.10.20	Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 ›	0.53	37.0	4.23e-01	88.8%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3507895	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.55	47.0	3.67e-01	93.9%	50.0%

D3 medium residues 117-174_213-235_276-309

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mzvA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	39.0	2.98e-01	76.5%	97.4%
7f16R01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	36.0	2.69e-01	70.4%	75.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5054107	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.54	41.0	3.21e-01	79.1%	55.9%
3726969	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.53	38.0	2.55e-01	73.0%	61.3%
3588846	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.52	39.0	3.10e-01	80.9%	54.9%
2816199	621.1.1.1 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C	0.51	33.0	3.64e-01	80.0%	86.2%

D4 medium residues 236-275_334-396

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase,_partial__YP_002364303__Grapevine_leafroll-associated_virus_10__367121__D252-284_355-434

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	71.7	7.90e-20	62.1%	14.5%