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ORF_2_precursor

Euk-Vir

Strawberry_pallidosis-associated_virus

ORF_2_precursor__YP_025083__Strawberry_pallidosis-associated_virus__227507

Identity

Accession:: YP_025083 ↗
Protein ID:: ORF_2_precursor
Kingdom:: euk

Quality

74.1 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Strawberry_pallidosis-associated_virus

TaxID: 227507

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-77

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nyjA00	1.20.120.770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain	0.73	65.0	4.56e-01	100.0%	32.6%
1zx3A01	1.10.287.1020	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like	0.69	49.0	4.27e-01	100.0%	49.4%
3icxA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.68	56.0	5.12e-01	100.0%	69.3%
1ij5A01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	54.0	4.99e-01	100.0%	88.2%
1tj7A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.63	42.0	3.53e-01	70.7%	41.9%
4ex8A00	3.40.1790.10	Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain	0.61	53.0	3.38e-01	100.0%	38.2%
1cf7B00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.60	41.0	3.73e-01	72.4%	63.4%
4lunU00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	49.0	3.11e-01	100.0%	19.3%
3of4A00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.57	45.0	3.21e-01	93.1%	74.4%
3bemB00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.55	43.0	3.03e-01	91.4%	72.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5005807	2003.1.1.24 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH	0.69	55.0	3.64e-01	98.3%	20.4%
4086475	3755.3.1.466 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC	0.68	59.0	4.39e-01	100.0%	37.4%
4959775	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.66	57.0	3.62e-01	100.0%	19.0%
3711095	3075.1.1.0 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA	0.64	44.0	4.13e-01	75.9%	57.3%
4029883	5060.1.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39	0.62	44.0	3.55e-01	91.4%	37.5%
4952348	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.61	46.0	3.23e-01	82.8%	24.4%
3933114	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.61	52.0	3.26e-01	98.3%	42.4%
3927738	632.8.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	0.59	48.0	4.16e-01	94.8%	56.8%