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ORF_C

Euk-Vir

Trichoplusia_ni_TED_virus

ORF_C__YP_009507249__Trichoplusia_ni_TED_virus__2083181

Identity

Accession:
YP_009507249 ↗
Protein ID:
ORF_C
Kingdom:
euk

Quality

58.4 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Metaviridae› Errantivirus› Trichoplusia_ni_TED_virus

TaxID: 2083181

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 223-304
PDB
D2 medium residues 3-73
PDB
D3 medium residues 81-129
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.69 48.0 4.59e-01 100.0% 63.2%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.63 49.0 2.86e-01 89.8% 46.0%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.61 39.0 4.04e-01 100.0% 72.7%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.59 52.0 3.35e-01 100.0% 72.8%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.57 36.0 3.62e-01 100.0% 57.7%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 2.68e-01 95.9% 28.1%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.56 44.0 3.48e-01 100.0% 40.2%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 45.0 2.82e-01 95.9% 60.7%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.54 44.0 2.72e-01 100.0% 64.4%
2debA03 3.30.559.70 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 0.53 43.0 2.80e-01 98.0% 81.6%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.05e-01 100.0% 51.1%
1knxE02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.20e-01 100.0% 70.9%
1qmgB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 44.0 2.98e-01 100.0% 73.6%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.07e-01 100.0% 60.8%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.28e-01 100.0% 65.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 37.0 2.71e-01 91.8% 91.9%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 2.91e-01 98.0% 29.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958959 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.71 42.0 4.40e-01 100.0% 64.4%
3799822 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.66 34.0 3.78e-01 100.0% 60.0%
3327381 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.66 40.0 2.20e-01 100.0% 3.4%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.66 41.0 3.97e-01 100.0% 51.7%
3867638 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.64 37.0 2.28e-01 100.0% 9.0%
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.63 40.0 3.64e-01 100.0% 42.9%
3758301 103.1.1.94 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF26112 0.63 45.0 3.19e-01 100.0% 24.5%
3381794 207.1.1.57 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.61 45.0 2.46e-01 85.7% 11.3%
4669519 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 44.0 3.21e-01 77.6% 61.5%
3381254 109.4.1.2593 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, Eplus_motif 0.58 50.0 3.05e-01 95.9% 16.9%
5050894 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.58 39.0 2.53e-01 71.4% 24.2%
3377656 207.1.1.137 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.57 37.0 2.10e-01 100.0% 6.1%
5014484 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.57 48.0 2.84e-01 93.9% 49.5%
3651717 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.57 51.0 3.16e-01 100.0% 55.6%
3232611 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.57 38.0 2.18e-01 71.4% 40.6%
3470610 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 46.0 2.84e-01 93.9% 61.3%
4972768 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 46.0 2.94e-01 100.0% 38.2%
4179803 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 42.0 2.91e-01 87.8% 92.0%
3916265 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.56 38.0 2.25e-01 71.4% 58.1%
3164399 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.55 43.0 2.82e-01 89.8% 69.4%
4938028 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 33.0 3.37e-01 100.0% 52.0%
998566 4055.1.1.0 ↗ a+b complex topology › a+b domain in virulence-associated V antigen › a+b domain in virulence-associated V antigen › a+b domain in virulence-associated V antigen 0.55 41.0 3.16e-01 95.9% 34.5%
3519663 4001.1.1.0 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins 0.54 45.0 3.51e-01 95.9% 41.7%
3939016 4001.1.1.0 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins 0.54 45.0 3.67e-01 95.9% 50.5%
None — 0.53 44.0 3.18e-01 100.0% 89.1%
5039979 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.53 40.0 2.89e-01 100.0% 29.6%
3339444 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.53 44.0 3.47e-01 93.9% 44.8%
3181885 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.53 45.0 3.44e-01 95.9% 59.1%
5032304 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 44.0 2.91e-01 100.0% 65.2%
5060820 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.52 42.0 2.52e-01 100.0% 99.6%
376220 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 40.0 2.54e-01 93.9% 62.3%
3940062 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 40.0 2.55e-01 93.9% 85.7%
3716557 75.1.1.1 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.52 43.0 2.80e-01 95.9% 64.0%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 43.0 4.20e-01 100.0% 87.5%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 33.0 3.31e-01 100.0% 58.2%
4967749 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 44.0 3.20e-01 100.0% 87.9%
3940708 4012.4.1.1 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain › DPAGT1_ins 0.51 37.0 3.84e-01 100.0% 82.2%
2623930 4001.1.1.4 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.50 39.0 3.11e-01 89.8% 41.4%
5025326 2003.1.7.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › CoA_trans 0.50 42.0 2.61e-01 93.9% 66.6%
D4 medium residues 137-218_318-326
PDB