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OV032902.1__CAH0447865.1__SM033_00041__00041

Bact-Vir

OV032902.1__CAH0447865.1__SM033_00041__00041

Identity

Accession:
OV032902 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-104
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.80 65.0 6.56e-01 97.9% 91.7%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.78 66.0 5.29e-01 95.8% 49.5%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 66.0 6.47e-01 100.0% 88.2%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.73 63.0 5.53e-01 100.0% 80.8%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.72 60.0 6.14e-01 93.8% 100.0%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.70 60.0 5.60e-01 100.0% 95.1%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.69 59.0 5.47e-01 97.9% 85.5%
2k6pA00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.67 54.0 4.53e-01 91.7% 95.2%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 51.0 3.61e-01 100.0% 27.8%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.63 39.0 3.14e-01 77.1% 31.6%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 46.0 3.84e-01 93.8% 46.0%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 3.55e-01 100.0% 29.4%
3aogA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 49.0 3.55e-01 100.0% 41.3%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.60 50.0 4.64e-01 97.9% 93.7%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.59 44.0 4.04e-01 85.4% 95.7%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.59 45.0 3.62e-01 87.5% 81.7%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 46.0 4.04e-01 85.4% 86.1%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 44.0 4.60e-01 87.5% 90.9%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 37.0 3.33e-01 77.1% 46.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.00e-01 97.9% 67.7%
3swoA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 44.0 3.65e-01 100.0% 96.2%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.09e-01 75.0% 41.9%
7rh5M01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 43.0 3.02e-01 95.8% 53.0%
1b3mA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 46.0 3.05e-01 100.0% 57.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 73.0 6.55e-01 100.0% 70.8%
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.80 66.0 6.59e-01 100.0% 88.0%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 71.0 6.66e-01 100.0% 84.5%
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 69.0 6.51e-01 97.9% 81.4%
1322863 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 66.0 6.73e-01 93.8% 100.0%
1694867 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 68.0 6.67e-01 100.0% 96.2%
1322862 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 68.0 6.81e-01 97.9% 97.9%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 65.0 6.25e-01 100.0% 83.3%
4009008 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 64.0 6.20e-01 93.8% 94.5%
4444075 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 62.0 6.43e-01 95.8% 100.0%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 67.0 6.70e-01 100.0% 96.0%
4026053 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 55.0 5.91e-01 83.3% 92.5%
4307941 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.76 65.0 6.16e-01 97.9% 96.6%
4233290 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 65.0 6.44e-01 100.0% 94.0%
3976685 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.75 65.0 6.28e-01 97.9% 96.3%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.73 63.0 5.53e-01 100.0% 80.8%
3975892 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.72 59.0 5.67e-01 93.8% 100.0%
3981632 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.72 51.0 5.44e-01 89.6% 92.5%
3999193 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.71 46.0 4.07e-01 91.7% 47.1%
8553 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.69 59.0 5.47e-01 97.9% 85.5%
4009012 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.68 58.0 5.37e-01 100.0% 79.7%
3387904 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.68 49.0 4.17e-01 93.8% 46.3%
3507376 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 46.0 4.98e-01 89.6% 90.0%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.28e-01 83.3% 71.1%
2736861 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.63 54.0 4.89e-01 100.0% 71.6%
4074370 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.63 47.0 4.05e-01 93.8% 50.0%
3520959 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 41.0 4.54e-01 89.6% 91.4%
5047208 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.62 45.0 4.33e-01 93.8% 69.1%
2736862 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.62 51.0 4.67e-01 100.0% 77.9%
4935174 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 43.0 4.47e-01 91.7% 82.2%
3279326 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 48.0 4.00e-01 91.7% 100.0%
7161 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.61 46.0 3.84e-01 93.8% 46.0%
3507374 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.60 42.0 3.58e-01 93.8% 43.8%
5042815 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.58 46.0 4.01e-01 93.8% 65.0%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 47.0 4.31e-01 95.8% 69.2%
4945988 284.4.1.3 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C 0.57 44.0 4.40e-01 91.7% 84.0%
3501515 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.57 40.0 3.57e-01 97.9% 51.4%
3502375 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 42.0 4.35e-01 87.5% 91.1%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.81e-01 97.9% 64.0%
D2 high residues 307-386
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 33.0 2.34e-01 100.0% 16.7%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 38.0 2.78e-01 77.5% 53.4%
4p22A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.25e-01 100.0% 83.9%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.51 40.0 3.19e-01 90.0% 94.1%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 37.0 3.12e-01 78.8% 98.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.80 47.0 5.97e-01 96.2% 96.0%
4500970 2007.1.2.42 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › PF29770 0.55 49.0 3.80e-01 100.0% 86.5%
3352390 5.1.4.508 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30952 0.55 42.0 3.01e-01 90.0% 40.3%
3737184 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.52 42.0 3.03e-01 90.0% 79.2%
4030216 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.79e-01 100.0% 22.4%
D3 high residues 390-499
PDB
D4 medium residues 113-217
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.85 37.0 5.64e-01 83.8% 95.8%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.75 37.0 4.44e-01 81.0% 69.9%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.63 36.0 4.61e-01 100.0% 96.8%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.59 36.0 4.53e-01 72.4% 100.0%
1wgvA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 3.31e-01 98.1% 54.0%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.27e-01 92.4% 39.5%
2d0oB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.53 36.0 3.60e-01 98.1% 68.5%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 30.0 3.09e-01 83.8% 56.9%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.45e-01 98.1% 70.7%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.52 38.0 4.08e-01 93.3% 91.2%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 3.10e-01 90.5% 51.9%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.51 32.0 3.87e-01 99.0% 100.0%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 23.0 2.78e-01 85.7% 62.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.50 24.0 3.04e-01 89.5% 74.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.84 38.0 5.56e-01 84.8% 94.0%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 37.0 5.53e-01 81.0% 96.0%
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 44.0 5.50e-01 100.0% 89.2%
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 40.0 5.39e-01 85.7% 93.2%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 42.0 5.59e-01 99.0% 98.3%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.75 37.0 4.44e-01 81.0% 69.9%
1694867 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.75 37.0 5.20e-01 81.9% 96.2%
4009008 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.68 36.0 4.94e-01 97.1% 100.0%
4009012 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.63 37.0 4.68e-01 79.0% 96.9%
8553 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.63 36.0 4.61e-01 100.0% 96.8%
2736862 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.60 35.0 4.25e-01 81.9% 89.7%
4500970 2007.1.2.42 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › PF29770 0.56 37.0 3.09e-01 96.2% 38.9%
3352390 5.1.4.508 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30952 0.56 46.0 3.37e-01 91.4% 67.2%
3634882 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 46.0 3.37e-01 90.5% 55.7%
3196432 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 47.0 3.29e-01 94.3% 52.3%
3215377 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.56 46.0 3.23e-01 92.4% 46.0%
3727890 5.1.4.97 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.55 46.0 2.99e-01 92.4% 52.8%
3199496 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 44.0 2.74e-01 88.6% 36.4%
3592335 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 3.13e-01 90.5% 43.9%
3236693 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.40e-01 94.3% 56.9%
3414375 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.53e-01 97.1% 58.6%
3938829 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.11e-01 94.3% 50.0%
3413401 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.97e-01 92.4% 39.2%
3472654 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.79e-01 94.3% 26.3%
5001911 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.53 44.0 3.20e-01 91.4% 50.5%
3819824 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 41.0 3.18e-01 84.8% 54.5%
3576278 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.53 45.0 3.07e-01 94.3% 50.6%
3990350 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 43.0 3.13e-01 90.5% 52.1%
1916716 5.1.4.63 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PorZ_N_b_propeller 0.53 43.0 3.19e-01 91.4% 52.3%
5040052 5.1.4.665 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.52 44.0 2.99e-01 93.3% 48.8%
5039380 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 3.11e-01 94.3% 51.6%
3221443 5.1.4.61 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.52 43.0 3.00e-01 89.5% 50.4%
3594123 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 3.20e-01 94.3% 53.4%
3594972 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 3.03e-01 94.3% 58.9%
3241772 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 3.02e-01 94.3% 46.4%
4008223 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 32.0 3.17e-01 81.9% 60.0%
3933646 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 34.0 3.53e-01 89.5% 72.0%
5080350 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 3.01e-01 93.3% 43.0%
3909941 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 43.0 2.93e-01 94.3% 42.3%
D5 medium residues 223-274
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.86 71.0 7.41e-01 98.1% 95.8%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.73 63.0 5.65e-01 96.2% 95.9%
5n6lA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.69 60.0 3.79e-01 100.0% 36.1%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.68 59.0 5.45e-01 98.1% 95.6%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.68 59.0 5.38e-01 100.0% 95.8%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 50.0 4.91e-01 86.5% 73.7%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 57.0 5.32e-01 98.1% 95.5%
3mxlA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.66 56.0 4.55e-01 98.1% 96.2%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 54.0 4.53e-01 94.2% 100.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 42.0 2.77e-01 76.9% 15.8%
2r2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.60e-01 100.0% 92.1%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.61 44.0 4.21e-01 76.9% 68.9%
1lqlA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 32.0 3.86e-01 100.0% 92.3%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 4.29e-01 100.0% 99.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.60 46.0 3.10e-01 84.6% 24.6%
4n03A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 51.0 3.55e-01 100.0% 31.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.00e-01 94.2% 58.9%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 45.0 2.62e-01 96.2% 8.3%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 3.87e-01 73.1% 67.3%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 48.0 3.49e-01 100.0% 48.1%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 34.0 3.54e-01 76.9% 60.0%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.57 41.0 3.43e-01 80.8% 73.5%
5b6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.57 41.0 3.36e-01 80.8% 72.0%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 47.0 2.92e-01 98.1% 32.7%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 47.0 3.40e-01 98.1% 48.5%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 47.0 3.40e-01 100.0% 47.0%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 47.0 3.34e-01 100.0% 44.1%
3go6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 39.0 2.51e-01 100.0% 13.9%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 46.0 3.35e-01 100.0% 45.5%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.01e-01 100.0% 72.9%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 46.0 3.69e-01 98.1% 76.8%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.55 43.0 3.71e-01 86.5% 95.3%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.55 42.0 3.61e-01 86.5% 87.8%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.89e-01 98.1% 96.7%
1y7eA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 46.0 2.96e-01 98.1% 33.2%
3czbA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.54 44.0 3.24e-01 96.2% 100.0%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.54e-01 88.5% 25.0%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.23e-01 98.1% 35.9%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.20e-01 88.5% 85.4%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 42.0 2.63e-01 100.0% 32.5%
2q6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.53 43.0 3.48e-01 100.0% 45.6%
3ewmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 36.0 2.29e-01 71.2% 93.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 37.0 3.29e-01 76.9% 53.1%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.72e-01 100.0% 45.5%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 43.0 2.59e-01 92.3% 27.4%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 41.0 2.64e-01 96.2% 49.8%
2qcuA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 40.0 2.89e-01 86.5% 87.6%
7bj4A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.61e-01 100.0% 32.6%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 40.0 3.03e-01 88.5% 54.5%
3varA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 40.0 2.59e-01 98.1% 33.6%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 42.0 3.25e-01 100.0% 67.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951165 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 56.0 5.49e-01 86.5% 74.5%
4123857 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.75 51.0 5.57e-01 88.5% 92.5%
3989371 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.73 64.0 5.92e-01 96.2% 98.5%
4049740 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.72 65.0 5.73e-01 100.0% 94.7%
5033424 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 54.0 5.16e-01 88.5% 70.0%
4981303 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.71 52.0 5.16e-01 86.5% 74.5%
3589428 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.71 63.0 5.74e-01 100.0% 97.1%
3873763 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.69 47.0 5.14e-01 88.5% 92.5%
4950522 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.69 51.0 5.01e-01 90.4% 74.5%
4504459 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 61.0 5.37e-01 100.0% 96.0%
4340002 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.68 61.0 5.51e-01 100.0% 98.6%
3959879 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.67 59.0 5.36e-01 100.0% 100.0%
4958978 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 55.0 4.98e-01 98.1% 96.0%
2528374 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.66 50.0 4.41e-01 88.5% 55.8%
5036381 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.66 51.0 4.85e-01 88.5% 71.7%
3329019 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 50.0 5.10e-01 88.5% 88.0%
3263053 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 56.0 5.09e-01 98.1% 100.0%
4143576 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.63 53.0 4.87e-01 96.2% 97.1%
3166885 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 54.0 3.23e-01 98.1% 13.4%
3402339 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 53.0 3.66e-01 100.0% 31.4%
3335092 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.62 41.0 3.70e-01 73.1% 51.4%
5026883 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 53.0 4.44e-01 100.0% 71.3%
3593462 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.61 52.0 3.19e-01 98.1% 34.0%
4188650 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 51.0 4.17e-01 100.0% 90.5%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.59 48.0 3.82e-01 94.2% 73.9%
1488002 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.58 45.0 3.56e-01 96.2% 39.1%
3615349 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.39e-01 96.2% 4.6%
3939750 5.1.4.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.57 49.0 2.87e-01 98.1% 17.7%
5044746 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 49.0 3.42e-01 100.0% 41.7%
3508120 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.57 48.0 3.83e-01 100.0% 74.8%
3829694 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 50.0 3.03e-01 98.1% 45.4%
4514947 1032.1.1.0 alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.57 48.0 2.60e-01 100.0% 52.7%
4398068 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.56 48.0 2.98e-01 100.0% 31.3%
4544757 292.1.1.1 a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.56 46.0 3.01e-01 100.0% 29.1%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.56 48.0 3.97e-01 98.1% 70.5%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.56 41.0 2.68e-01 84.6% 26.8%
5022489 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 47.0 2.83e-01 100.0% 22.9%
4567402 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 44.0 2.81e-01 96.2% 24.1%
3444858 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.53 46.0 2.82e-01 100.0% 23.4%
4665960 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.53 44.0 3.14e-01 94.2% 45.5%
3903430 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.53 35.0 3.02e-01 75.0% 41.2%
3394097 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 44.0 3.69e-01 100.0% 79.0%
3518153 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.53 43.0 3.56e-01 100.0% 78.2%
3977885 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.53 41.0 2.54e-01 90.4% 35.4%
2029617 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.52 44.0 2.70e-01 100.0% 43.2%
3464113 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 38.0 3.16e-01 78.8% 49.0%
4285674 2.1.1.26 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.52 37.0 3.21e-01 78.8% 88.9%
3782900 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 42.0 3.13e-01 100.0% 33.6%
5056824 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.52 44.0 2.91e-01 100.0% 86.1%
4998975 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 40.0 2.58e-01 92.3% 39.3%
5053692 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 40.0 2.95e-01 98.1% 65.0%
4026020 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.44e-01 90.4% 19.0%
3307679 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.51 43.0 3.21e-01 98.1% 81.4%
3980770 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.50 42.0 3.00e-01 96.2% 40.0%
3204055 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.50 35.0 3.30e-01 75.0% 61.5%
3485191 2011.1.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 0.50 40.0 2.52e-01 98.1% 30.4%