←Back to structures
OV032902.1__CAH0447890.1__SM033_00066__00066
Bact-VirOV032902.1__CAH0447890.1__SM033_00066__00066
Identity
- Accession:
- OV032902 ↗
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-105
Domain cluster:
rep: OM982621.1__UOL48731.1__X__00136__D7-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26820.1 best | Phage_T4_Y00F | 46.9 | 6.10e-12 | 100.0% | 94.5% |
CATH (2)
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017350 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 33.0 | 3.87e-01 | 100.0% | 72.9% |
| 4995626 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 31.0 | 3.50e-01 | 99.0% | 70.7% |
| 3455319 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.53 | 48.0 | 3.65e-01 | 100.0% | 53.9% |
| 4964831 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.52 | 41.0 | 3.44e-01 | 86.3% | 68.3% |
| 4076971 | 2.1.1.35 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rho_RNA_bind | 0.51 | 31.0 | 3.52e-01 | 100.0% | 78.8% |
| 4930482 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.51 | 37.0 | 3.51e-01 | 100.0% | 63.2% |
D2
medium
residues 109-151
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.88 | 78.0 | 6.34e-01 | 100.0% | 59.0% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.85 | 72.0 | 5.07e-01 | 95.3% | 32.6% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.83 | 73.0 | 6.51e-01 | 100.0% | 72.1% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.82 | 63.0 | 3.63e-01 | 88.4% | 10.2% |
| 2lnzA00 | 1.10.286.70 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain | 0.81 | 63.0 | 6.49e-01 | 88.4% | 92.5% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.79 | 65.0 | 4.70e-01 | 100.0% | 33.1% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.78 | 65.0 | 4.57e-01 | 95.3% | 30.1% |
| 1f14A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.75 | 63.0 | 4.10e-01 | 97.7% | 22.4% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 59.0 | 5.27e-01 | 95.3% | 62.3% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 58.0 | 5.77e-01 | 90.7% | 91.3% |
| 1e94A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.72 | 57.0 | 3.85e-01 | 90.7% | 23.6% |
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.72 | 58.0 | 5.18e-01 | 88.4% | 65.0% |
| 3bruB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.72 | 59.0 | 3.83e-01 | 90.7% | 33.9% |
| 1cp9A02 | 1.10.287.150 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 47.0 | 5.23e-01 | 72.1% | 100.0% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 52.0 | 4.88e-01 | 86.0% | 68.4% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 52.0 | 4.91e-01 | 95.3% | 67.3% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 48.0 | 4.47e-01 | 81.4% | 58.6% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 4.62e-01 | 83.7% | 69.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 53.0 | 4.41e-01 | 93.0% | 51.8% |
| 2mvtA00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.66 | 46.0 | 4.51e-01 | 76.7% | 68.1% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.66 | 47.0 | 4.12e-01 | 83.7% | 48.6% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 50.0 | 3.62e-01 | 100.0% | 28.7% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.63 | 55.0 | 5.16e-01 | 100.0% | 78.8% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.63 | 51.0 | 4.01e-01 | 90.7% | 72.5% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 49.0 | 4.44e-01 | 90.7% | 62.3% |
| 3rrwB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.63 | 51.0 | 3.48e-01 | 100.0% | 41.8% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.61 | 44.0 | 3.83e-01 | 79.1% | 52.9% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.59 | 42.0 | 4.02e-01 | 81.4% | 64.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3992048 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 61.0 | 5.59e-01 | 81.4% | 60.0% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.82 | 69.0 | 6.13e-01 | 100.0% | 66.7% |
| 3704050 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 58.0 | 5.53e-01 | 76.7% | 66.0% |
| 3702894 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.80 | 61.0 | 5.84e-01 | 86.0% | 72.0% |
| 4945473 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.78 | 69.0 | 4.07e-01 | 100.0% | 45.2% |
| 5078898 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.78 | 63.0 | 4.78e-01 | 97.7% | 37.3% |
| 3423850 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.77 | 55.0 | 6.03e-01 | 74.4% | 85.7% |
| 3299919 | 568.1.1.6 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CX9C | 0.76 | 54.0 | 4.32e-01 | 74.4% | 38.7% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.75 | 62.0 | 4.74e-01 | 100.0% | 48.2% |
| 3482139 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.74 | 51.0 | 4.54e-01 | 74.4% | 50.0% |
| 4108185 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.73 | 59.0 | 3.93e-01 | 90.7% | 22.9% |
| 4978149 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.73 | 58.0 | 4.53e-01 | 90.7% | 41.1% |
| 3781822 | 568.1.1.6 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CX9C | 0.73 | 53.0 | 3.96e-01 | 81.4% | 33.0% |
| 3253152 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.72 | 53.0 | 4.29e-01 | 86.0% | 40.0% |
| 3269124 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.72 | 52.0 | 5.12e-01 | 81.4% | 73.3% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.71 | 58.0 | 4.98e-01 | 100.0% | 55.7% |
| 3665480 | 109.4.1.1559 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 | 0.71 | 61.0 | 3.76e-01 | 100.0% | 15.7% |
| 4985070 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.70 | 51.0 | 4.34e-01 | 83.7% | 46.7% |
| 3451236 | 397.4.1.3 ↗ | few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 | 0.69 | 54.0 | 5.36e-01 | 97.7% | 91.1% |
| 3617842 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.69 | 54.0 | 4.69e-01 | 100.0% | 55.0% |
| 3599583 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.68 | 53.0 | 4.05e-01 | 90.7% | 39.1% |
| 3268175 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.68 | 52.0 | 4.42e-01 | 86.0% | 49.3% |
| 4038683 | 103.1.1.5 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › FmrO | 0.67 | 52.0 | 4.79e-01 | 90.7% | 66.7% |
| 5021288 | 213.1.1.53 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_6 | 0.67 | 55.0 | 3.73e-01 | 100.0% | 23.8% |
| 3998629 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.67 | 52.0 | 4.50e-01 | 97.7% | 62.5% |
| 3720277 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.67 | 57.0 | 4.13e-01 | 97.7% | 36.7% |
| 3953557 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.66 | 53.0 | 3.30e-01 | 93.0% | 22.7% |
| 3304548 | 103.1.1.74 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1677 | 0.66 | 49.0 | 4.34e-01 | 86.0% | 82.9% |
| 3993438 | 3552.1.1.0 ↗ | alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain | 0.66 | 51.0 | 4.32e-01 | 93.0% | 48.8% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.65 | 52.0 | 4.90e-01 | 93.0% | 85.5% |
| 3322252 | 4952.1.1.3 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › DUF1677 | 0.64 | 47.0 | 4.18e-01 | 86.0% | 85.7% |
| 4608698 | 568.1.1.4 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH | 0.64 | 56.0 | 4.78e-01 | 100.0% | 64.3% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.62 | 51.0 | 4.09e-01 | 97.7% | 45.6% |