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OV032902.1__CAH0447907.1__SM033_00083__00083

Bact-Vir

OV032902.1__CAH0447907.1__SM033_00083__00083

Identity

Accession:
OV032902 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VpaM_sm033

TaxID: 2893233

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 61-162
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 34.3 2.00e-08 47.1% 97.8%
D2 high residues 170-214
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1znnA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.81 66.0 4.08e-01 91.1% 31.0%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 59.0 5.81e-01 88.9% 93.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.52e-01 77.8% 53.7%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.71 51.0 3.02e-01 77.8% 22.5%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 59.0 4.53e-01 100.0% 48.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 3.99e-01 77.8% 40.2%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 54.0 4.67e-01 95.6% 70.5%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 5.28e-01 97.8% 85.4%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.50e-01 77.8% 62.1%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 54.0 4.90e-01 97.8% 68.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.14e-01 80.0% 48.0%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.69e-01 77.8% 71.4%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 3.81e-01 80.0% 39.3%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 3.77e-01 97.8% 40.0%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.38e-01 100.0% 60.3%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.82e-01 100.0% 44.3%
2xf5B00 1.10.10.1530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 44.0 4.36e-01 86.7% 86.0%
2b2hA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.60 43.0 2.54e-01 77.8% 68.3%
2jmsA01 1.20.50.40 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.59 43.0 4.28e-01 82.2% 89.4%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 42.0 2.55e-01 77.8% 32.3%
1t0fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.91e-01 100.0% 46.5%
3fkeA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.53 37.0 3.35e-01 77.8% 97.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603382 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.81 67.0 4.42e-01 95.6% 47.6%
5070623 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.78 58.0 5.67e-01 82.2% 76.0%
3970951 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 6.03e-01 91.1% 82.0%
5002775 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.77 52.0 5.46e-01 71.1% 82.5%
3407600 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 57.0 5.28e-01 88.9% 65.0%
5042947 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 56.0 5.53e-01 93.3% 92.0%
4258153 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.69 56.0 5.29e-01 95.6% 76.4%
2556 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.68 53.0 5.28e-01 97.8% 85.4%
3964882 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 4.08e-01 100.0% 31.9%
5030241 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 55.0 5.13e-01 97.8% 73.3%
4241531 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 48.0 4.22e-01 77.8% 51.4%
4392311 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.66 48.0 4.82e-01 84.4% 91.1%
5018478 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.45e-01 88.9% 54.7%
3963336 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.66 52.0 3.41e-01 100.0% 19.1%
4102412 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 48.0 3.83e-01 97.8% 40.0%
5068868 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 43.0 4.50e-01 71.1% 90.0%
4937490 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.64 43.0 4.48e-01 73.3% 90.0%
3485420 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 51.0 4.72e-01 100.0% 70.0%
3483570 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.14e-01 95.6% 89.5%
3986748 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 47.0 3.85e-01 100.0% 42.2%
3940886 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.12e-01 93.3% 93.3%
4624372 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 45.0 3.64e-01 80.0% 37.9%
3847014 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.63 51.0 3.97e-01 100.0% 65.2%
3946899 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 47.0 3.78e-01 100.0% 40.0%
3586125 592.5.1.0 ↗ alpha arrays › PWI domain-like › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain 0.61 49.0 4.70e-01 97.8% 96.4%
4974615 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 41.0 3.79e-01 91.1% 84.3%
None — 0.53 43.0 2.90e-01 95.6% 79.3%
1887687 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.51 39.0 2.36e-01 97.8% 38.1%
D3 medium residues 1-55
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 54.0 5.86e-01 94.5% 86.7%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 54.0 5.44e-01 70.9% 72.2%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 4.72e-01 89.1% 52.5%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 4.58e-01 90.9% 48.3%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 60.0 6.01e-01 92.7% 89.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.65e-01 89.1% 56.0%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 4.49e-01 76.4% 62.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.54e-01 94.5% 70.1%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 46.0 4.34e-01 83.6% 90.9%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 43.0 4.05e-01 83.6% 91.2%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.54 39.0 4.06e-01 92.7% 84.6%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.52 42.0 3.11e-01 98.2% 39.9%
3fgrA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.51 38.0 3.00e-01 83.6% 48.4%
2yi9A02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.50 33.0 3.41e-01 83.6% 71.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018585 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 62.0 6.28e-01 92.7% 80.0%
3568862 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.82 68.0 6.43e-01 100.0% 75.4%
3988145 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.81 57.0 5.97e-01 90.9% 82.0%
4578266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 57.0 6.09e-01 83.6% 95.6%
3787936 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.20e-01 100.0% 81.7%
3857628 101.1.3.29 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N 0.77 64.0 6.07e-01 100.0% 76.9%
3871766 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.76 62.0 5.85e-01 100.0% 75.4%
3407600 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 5.65e-01 98.2% 75.0%
3953011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 59.0 5.93e-01 90.9% 83.6%
3590553 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 61.0 6.36e-01 100.0% 98.0%
2576 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.74 54.0 4.58e-01 90.9% 48.3%
5008425 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.73 54.0 4.75e-01 90.9% 53.8%
1159643 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.72 60.0 5.43e-01 92.7% 69.0%
3588052 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.72 63.0 5.52e-01 96.4% 66.3%
4031756 101.1.2.645 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.71 53.0 4.51e-01 90.9% 50.6%
4071326 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.71 51.0 4.50e-01 89.1% 52.5%
3178612 101.1.1.212 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_68 0.71 54.0 5.82e-01 94.5% 100.0%
3588225 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.71 61.0 4.70e-01 98.2% 44.2%
5038587 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.68 56.0 5.44e-01 92.7% 81.7%
5007028 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 50.0 5.01e-01 90.9% 80.0%
3590303 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.67 58.0 5.23e-01 96.4% 72.0%
5055912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.52e-01 94.5% 62.9%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.66 53.0 3.76e-01 90.9% 30.0%
4036133 101.29.1.0 ↗ alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.65 49.0 5.14e-01 96.4% 92.0%
4141532 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.94e-01 94.5% 97.8%
4965812 101.1.1.559 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.63 47.0 4.75e-01 98.2% 81.8%
4984666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 47.0 4.28e-01 92.7% 60.0%
3922335 101.1.1.221 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 0.60 48.0 4.03e-01 96.4% 50.5%
3588243 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 46.0 4.55e-01 87.3% 86.7%
3429968 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.55 46.0 4.25e-01 94.5% 71.4%
5078923 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.55 45.0 3.78e-01 96.4% 97.0%
3178557 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.51 41.0 2.48e-01 96.4% 12.3%
3602236 284.1.3.3 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.51 40.0 3.36e-01 87.3% 77.9%
3774145 192.17.1.6 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 0.50 34.0 2.63e-01 87.3% 29.6%