←Back to structures

OV032902.1__CAH0448116.1__SM033_00292__00292

Bact-Vir

OV032902.1__CAH0448116.1__SM033_00292__00292

Identity

Accession:
OV032902 ↗
Kingdom:
phage

Quality

62.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VpaM_sm033

TaxID: 2893233

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 603-673
PDB
Domain cluster: rep: NC_070975.1__YP_010672130.1__PQC36_gp003__00003__D122-192
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.84 75.0 6.53e-01 100.0% 66.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.80 52.0 6.24e-01 80.3% 100.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.78 57.0 6.19e-01 88.7% 91.5%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.73 59.0 3.85e-01 87.3% 27.1%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.70 63.0 4.11e-01 100.0% 49.2%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 61.0 5.63e-01 100.0% 83.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 53.0 3.98e-01 87.3% 35.1%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 54.0 3.87e-01 87.3% 54.7%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 54.0 3.71e-01 87.3% 50.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.65 42.0 4.40e-01 80.3% 72.3%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 57.0 4.64e-01 100.0% 81.6%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 53.0 3.47e-01 87.3% 54.7%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.64 57.0 4.48e-01 100.0% 94.0%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.63 49.0 4.08e-01 83.1% 63.1%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 49.0 4.16e-01 83.1% 64.6%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 51.0 3.63e-01 87.3% 53.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.80e-01 98.6% 87.0%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 52.0 3.93e-01 98.6% 87.8%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.60 52.0 4.43e-01 100.0% 85.0%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.59 53.0 4.55e-01 100.0% 90.2%
5hccB03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 4.28e-01 100.0% 98.3%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.22e-01 100.0% 95.2%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.39e-01 100.0% 95.4%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.57 48.0 3.54e-01 97.2% 42.4%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.73e-01 90.1% 73.2%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 41.0 3.84e-01 88.7% 61.6%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 51.0 3.89e-01 100.0% 59.5%
4ph8A00 2.60.40.2910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 3.89e-01 100.0% 92.0%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 4.23e-01 100.0% 94.0%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.56 47.0 3.89e-01 100.0% 80.7%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 4.37e-01 100.0% 93.3%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.16e-01 76.1% 56.5%
4f0jA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 2.82e-01 84.5% 32.1%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.52e-01 90.1% 77.7%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.55 48.0 3.50e-01 97.2% 65.1%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 45.0 3.47e-01 95.8% 97.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.54 42.0 4.09e-01 91.5% 74.7%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.30e-01 97.2% 68.2%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.54 47.0 3.58e-01 100.0% 78.2%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.00e-01 100.0% 95.7%
1n9pA00 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.54 45.0 3.43e-01 100.0% 64.5%
3b42A00 3.30.450.290 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 41.0 3.43e-01 83.1% 63.5%
4b60A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.61e-01 100.0% 95.5%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.97e-01 100.0% 96.2%
1ex2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 46.0 3.43e-01 98.6% 89.7%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.73e-01 90.1% 80.4%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.35e-01 94.4% 93.5%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.56e-01 100.0% 48.0%
1op4A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 47.0 4.37e-01 100.0% 98.9%
3f83A03 2.60.40.2040 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain 0.52 45.0 3.58e-01 100.0% 94.1%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.86e-01 100.0% 94.5%
8d7eC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.21e-01 98.6% 100.0%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.51 42.0 3.99e-01 94.4% 88.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951664 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.70 56.0 4.38e-01 87.3% 47.3%
3840079 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.67 60.0 4.70e-01 100.0% 62.0%
4009433 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 3.35e-01 87.3% 18.4%
4024746 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.66 45.0 3.18e-01 91.5% 22.2%
4650177 210.2.1.3 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.66 55.0 3.67e-01 93.0% 47.4%
3743328 633.33.1.1 ↗ alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.66 51.0 3.50e-01 83.1% 30.4%
3305439 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 58.0 3.68e-01 98.6% 92.5%
4941719 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 57.0 4.90e-01 100.0% 98.3%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 52.0 4.89e-01 85.9% 78.8%
5043104 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.65 53.0 4.31e-01 90.1% 62.2%
4248295 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 3.31e-01 87.3% 19.3%
4965901 331.2.1.15 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.64 53.0 3.95e-01 90.1% 49.7%
3280982 222.1.1.11 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF4442 0.64 57.0 4.46e-01 98.6% 83.3%
2938507 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.64 52.0 4.41e-01 88.7% 56.0%
3391001 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 54.0 3.76e-01 91.5% 36.8%
3492507 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.63 51.0 3.00e-01 87.3% 15.6%
3272801 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.63 52.0 3.25e-01 90.1% 42.9%
4021308 2485.2.1.0 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.62 43.0 3.66e-01 71.8% 80.0%
3550298 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 56.0 4.13e-01 98.6% 45.6%
3273857 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.62 49.0 3.99e-01 88.7% 72.5%
3530114 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.61 55.0 4.65e-01 100.0% 93.9%
3990957 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 48.0 3.95e-01 87.3% 45.9%
3811861 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 53.0 3.40e-01 98.6% 94.9%
3897413 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.59 53.0 4.54e-01 100.0% 93.9%
3376518 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.59 44.0 3.05e-01 94.4% 23.3%
4954387 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 48.0 3.69e-01 94.4% 96.1%
3748702 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 3.23e-01 100.0% 24.5%
3772852 11.1.1.239 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 0.59 51.0 4.37e-01 100.0% 92.5%
3643793 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 45.0 2.90e-01 85.9% 16.1%
3518469 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 50.0 4.16e-01 97.2% 69.2%
3926039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 49.0 4.39e-01 93.0% 97.0%
5062734 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.34e-01 100.0% 86.1%
3812918 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.58 52.0 3.65e-01 100.0% 45.0%
3910406 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.57 51.0 4.39e-01 100.0% 93.9%
3573045 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.57 49.0 4.15e-01 100.0% 87.2%
5080995 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.36e-01 100.0% 95.2%
3724449 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 43.0 4.08e-01 85.9% 71.1%
3584645 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.21e-01 100.0% 94.8%
4162152 109.4.1.1907 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xin 0.56 45.0 2.59e-01 85.9% 9.2%
3693121 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.55 44.0 3.85e-01 98.6% 56.4%
3481176 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.67e-01 87.3% 20.4%
3934301 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.55 43.0 3.11e-01 87.3% 74.0%
3389537 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 42.0 3.58e-01 85.9% 50.4%
146731 298.1.1.15 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.54 44.0 3.43e-01 95.8% 95.4%
3288669 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.53 45.0 3.59e-01 100.0% 48.8%
3420734 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 43.0 3.15e-01 98.6% 67.7%
2771632 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.52 45.0 3.39e-01 98.6% 69.3%
5080177 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.83e-01 100.0% 96.5%
3510465 11.1.1.628 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sarcoglycan_2 0.51 45.0 4.27e-01 95.8% 87.1%
5038238 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.87e-01 98.6% 98.0%
3808409 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.51 42.0 3.04e-01 100.0% 58.4%
4938171 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 46.0 4.07e-01 100.0% 97.0%
5080630 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.83e-01 98.6% 98.0%
D2 medium residues 99-149
PDB
D3 medium residues 286-349
PDB
Domain cluster: representative
D4 medium residues 350-399
PDB
D5 medium residues 417-472
PDB
Domain cluster: representative
D6 medium residues 473-596
PDB
Domain cluster: representative