←Back to structures

OX241425.1__CAH9011658.1__VP236O401_P0023__00023

Bact-Vir

OX241425.1__CAH9011658.1__VP236O401_P0023__00023

Identity

Accession:
OX241425 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_236O40-1

TaxID: 2963180

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-221
PDB
Domain cluster: rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
D2 medium residues 247-317
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.69 46.0 3.33e-01 81.7% 24.9%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.67 49.0 4.41e-01 76.1% 57.9%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.63 43.0 3.85e-01 83.1% 50.0%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.59 40.0 3.03e-01 70.4% 42.6%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.08e-01 73.2% 73.0%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 42.0 3.73e-01 77.5% 97.1%
2rh3A00 1.10.1220.190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain 0.58 39.0 3.28e-01 70.4% 76.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 37.0 3.22e-01 73.2% 40.7%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.24e-01 73.2% 60.7%
1q8iA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.57 39.0 2.83e-01 83.1% 23.9%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.86e-01 83.1% 33.6%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.57 38.0 3.07e-01 70.4% 35.9%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 2.97e-01 73.2% 44.9%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 2.75e-01 77.5% 82.9%
3h7hB00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.54 36.0 3.38e-01 76.1% 52.6%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 38.0 3.49e-01 77.5% 71.6%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 40.0 3.30e-01 80.3% 73.1%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 2.67e-01 83.1% 44.9%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 38.0 2.62e-01 83.1% 40.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.50 34.0 3.07e-01 70.4% 50.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954522 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.71 55.0 5.02e-01 83.1% 68.1%
5045252 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.70 53.0 4.80e-01 83.1% 65.0%
4898995 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.67 53.0 4.94e-01 85.9% 91.1%
5022821 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.65 46.0 4.38e-01 74.6% 67.1%
3060306 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 42.0 3.70e-01 73.2% 55.6%
1548765 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.60 42.0 3.76e-01 73.2% 57.8%
3861272 304.47.1.5 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › PF29544 0.57 42.0 3.69e-01 78.9% 62.7%
3716228 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 44.0 3.58e-01 88.7% 99.3%
4870150 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 32.0 2.60e-01 74.6% 30.6%
3937237 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 37.0 2.92e-01 74.6% 92.7%
3694899 5069.1.1.71 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF3176 0.53 42.0 3.11e-01 88.7% 76.5%
3893333 2004.1.1.495 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.52 40.0 3.00e-01 85.9% 58.5%