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OX241432.1__CAH9011769.1__VP131E341_P0021__00021

Bact-Vir

OX241432.1__CAH9011769.1__VP131E341_P0021__00021

Identity

Accession:
OX241432 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_131E34-1

TaxID: 2963166

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-91
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bn8A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 30.0 2.72e-01 93.0% 32.8%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 3.38e-01 91.9% 61.9%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 45.0 3.11e-01 86.0% 38.2%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.31e-01 90.7% 58.3%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 50.0 3.52e-01 100.0% 83.6%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.67e-01 95.3% 54.5%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.56 42.0 3.51e-01 80.2% 97.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 4.07e-01 100.0% 69.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 33.0 3.78e-01 93.0% 84.7%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 3.32e-01 100.0% 84.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 34.0 3.91e-01 76.7% 93.1%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.66e-01 98.8% 60.4%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.39e-01 100.0% 91.2%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.90e-01 86.0% 34.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.70e-01 87.2% 84.8%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.63e-01 70.9% 100.0%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 4.12e-01 94.2% 85.3%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.51 39.0 3.30e-01 100.0% 49.0%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.00e-01 100.0% 71.7%
3hz6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.02e-01 97.7% 31.2%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 42.0 3.08e-01 96.5% 41.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731161 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.70 46.0 5.01e-01 100.0% 82.9%
5054192 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.68 41.0 3.89e-01 100.0% 51.0%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 41.0 4.67e-01 93.0% 86.2%
3556735 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 38.0 4.13e-01 100.0% 72.6%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 45.0 4.26e-01 100.0% 67.0%
3509508 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.59 46.0 4.48e-01 100.0% 75.8%
3298632 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.58 45.0 4.34e-01 100.0% 72.0%
3788812 304.114.1.6 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 0.58 45.0 3.26e-01 83.7% 91.3%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.56 41.0 3.77e-01 96.5% 59.1%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 2.86e-01 82.6% 96.1%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 4.14e-01 97.7% 74.4%
5075018 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.56 28.0 2.54e-01 93.0% 31.7%
5049640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 4.17e-01 94.2% 82.3%
4200272 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.55 38.0 3.76e-01 70.9% 94.4%
4032501 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 37.0 3.93e-01 100.0% 80.0%
4562403 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.54 36.0 3.77e-01 100.0% 77.3%
4659931 2003.1.2.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.54 43.0 2.92e-01 88.4% 67.4%
5001324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.77e-01 95.3% 64.8%
3591459 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 39.0 3.96e-01 95.3% 77.6%
3275512 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.54 44.0 3.17e-01 94.2% 84.9%
5076410 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 40.0 2.64e-01 80.2% 95.9%
4982659 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 41.0 2.68e-01 81.4% 100.0%
4452399 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 43.0 3.08e-01 88.4% 88.5%
3991419 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.63e-01 84.9% 83.7%
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 39.0 3.86e-01 98.8% 75.6%
5069333 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 40.0 2.65e-01 83.7% 92.8%
4257154 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.52 48.0 4.42e-01 100.0% 79.6%
3604159 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.82e-01 100.0% 68.5%
4980592 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.73e-01 95.3% 39.4%
3840090 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 36.0 2.80e-01 73.3% 100.0%
169498 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.51 44.0 4.02e-01 100.0% 73.0%
329360 3534.1.1.2 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1285_C 0.51 40.0 3.87e-01 100.0% 73.3%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.51 35.0 3.82e-01 95.3% 90.0%
4547176 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 43.0 2.80e-01 96.5% 74.4%
3889995 2003.1.3.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 0.50 42.0 2.65e-01 90.7% 49.2%